Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01964 ATGGAGCTTCTTCACAACCTCAACAACATTCTCAGCACAATCCTGCTCCTAATCTTATGCATGTTCCCTCACTCACTCAAGTGCCAACAAACATACCTCAATGGCACTGTCTATGATTGTTCTGACAACCCTTCAGCACCAAAAGGGTACCTTTGCAATGCTCATCAAAAGTCATGCACTTCCTTTCTACTTTTCAGGTCAAAACCTCCCTATGATAGCCCTGTAAGAATTGCATACCTTCTTGGCTCTGAGGCATCCAGCATAGCCTCAATCAACAAGATCTCAAGCAGTGACAAGATTGCTTCCAACAAGTCAATAATTGTTCCTGTGTCATGTTCATGTTCTGGAAACATCTACCAGCACAACACACCCTACACTGCCAGCAAGAATGACACATACTATAAGTTGGTGAAAGAAACCTTCCAAGGCCTCACCACATGTCAAGCAATGATGGGGCAGAATTACTATGCTGCTAGAGACATTGCAATTGGTGCTCAGCTCACAGTTCCGATGTTGTGTGCTTGTCCAACTGAAAATCAAACAGCAAGAGGGGTCACTTCTTTGCTGGTTTACTTGGTGAATTATGGTGACACTATTAAGTCCATAGGAGAGGCTTATGGTGTGGATGAACAAAGTATGCTAGAGGCCAATGAGTTGCCAGTGGCACAAAGTAAAAGCAGCAGCATGGTCCTCCTTGCCTTGACACCTATTTTAGTTCCTCTATTAGGGAAGAACTGCAAAGAGAATCCAGATAAATTCTATTGTAAATGTTACCGGGCACCAGATGGAAGCTCCCAGGGGTTATTCTGTGATGAATCTGATGGTCAGAAATTTCCTGCCAGATTGGTTGCTGGTTTAGGTGTTGGACTTGGTGTAGCCTTTCTATGTTTGTTTCTTTTGGGGTACAAGTTATATCGATACATACAGAAGAAGAGAGAAAGTAATCGCAAGGAAAAGCTGTTCAAGCAAAACGGTGGCTACTTGTTACAAGAGAAGCTCTCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACAGCTGAGGAGCTAAAAAGAgcaacagacaactacaacagaagcaggtttcttggtcaaggaggctatggcacagtgtacaaaggaatgttaccagatggaaccatagttgcagttaaaaagtccaaagagattgaaaggaaccaaatagagacttttgtcaatgaagtggtcattctatctcagatcaaccacaggaacattgtcaaactctttggttgttgtcttgagacagaatctcccttactagtctatgaattcattccaaatggaacactttctcatcatatccataggagagacaatgagccatctcttccatgggatactcgccttagaattgcatgtgaggttgctggagcagtggcatatatgcatttttcagcttctattcccattttccatagagacatcaaacccaccaacatacttttagatagtaactacaatgccaaaatgtctgattttggaacatcaaggtcagtgccagtagataagactcacttgaccacagctgtaggaggaacttttgggtacatagaccctgaatattttcagtctagtcaattttcagataaaagtgatgtgtatagttttggggttgtgcttgtggagCTCATAACTGGGAAAAAGCCTATTTCATTCTTGCATGAAGATGAGGGTCAGAACCTGATTGCACAGTTCATTTCTTTGATGAAGGAGAACCAAGTTTTTGAAATTTTAGATGCCAGGGTGCTTAAGGAAGCAAGGAAAGATGACATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCAGCAGAGTTAGAAGCATTGAGAAAGGTGCAAAGTTCCTTACAGATCAACCATGATCATGAGCACACCACTAGTGACATAGTTCAAGAATGCACAGAGGAAAGCATGTCACTGTCCTTACATTTAGAGTACACATCCTTTTAG 2013 0.2966 MELLHNLNNILSTILLLILCMFPHSLKCQQTYLNGTVYDCSDNPSAPKGYLCNAHQKSCTSFLLFRSKPPYDSPVRIAYLLGSEASSIASINKISSSDKIASNKSIIVPVSCSCSGNIYQHNTPYTASKNDTYYKLVKETFQGLTTCQAMMGQNYYAARDIAIGAQLTVPMLCACPTENQTARGVTSLLVYLVNYGDTIKSIGEAYGVDEQSMLEANELPVAQSKSSSMVLLALTPILVPLLGKNCKENPDKFYCKCYRAPDGSSQGLFCDESDGQKFPARLVAGLGVGLGVAFLCLFLLGYKLYRYIQKKRESNRKEKLFKQNGGYLLQEKLSSYGNGEMAKLFTAEELKRATDNYNRSRFLGQGGYGTVYKGMLPDGTIVAVKKSKEIERNQIETFVNEVVILSQINHRNIVKLFGCCLETESPLLVYEFIPNGTLSHHIHRRDNEPSLPWDTRLRIACEVAGAVAYMHFSASIPIFHRDIKPTNILLDSNYNAKMSDFGTSRSVPVDKTHLTTAVGGTFGYIDPEYFQSSQFSDKSDVYSFGVVLVELITGKKPISFLHEDEGQNLIAQFISLMKENQVFEILDARVLKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSAELEALRKVQSSLQINHDHEHTTSDIVQECTEESMSLSLHLEYTSF 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01964 670 Coils Coil 620 640 - -
Cca07g01964 670 Pfam LysM domain 191 219 IPR018392 -
Cca07g01964 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Cca07g01964 670 Pfam Protein kinase domain 357 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01964 670 SMART serkin_6 357 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01964 670 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Cca07g01964 670 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 655 IPR045274 GO:0007166
Cca07g01964 670 SUPERFAMILY Protein kinase-like (PK-like) 340 627 IPR011009 -
Cca07g01964 670 PANTHER LYSM TYPE RECEPTOR KINASE 28 655 - -
Cca07g01964 670 CDD STKc_IRAK 363 630 - -
Cca07g01964 670 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Cca07g01964 670 Gene3D Phosphorylase Kinase; domain 1 330 432 - -
Cca07g01964 670 ProSiteProfiles Protein kinase domain profile. 357 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01964 Cca-Chr7 47137500 47140503 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01964 287 631 Receptor kinase-like Gene Family AT1G16130 58.213 1.15e-142 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Cca07g01964 Pkinase 3.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01964 - - gmx:100795455 1150.19