Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01962 ATGCATAACCCCATGCCCAATCTCTCTCCCTCCGTTTCCACCGTGCCACCCTCAAGCCTGGCCACCAACAATGAACTCGACACGTTCACCAAGTTGTTCCTCTTACTAATATTCCTCTCTCTATTCCTTCGCGTGTGTTACGTCTACATCTCCATGCGTCGTGACCGAAACCTCAACGCTAATAACATCCAACATGGTGACGCTCAAAACAACACCACGGGGCTTCCCTATAACGTTATAAACTCGTACCACACTTTCCCTTATAGCAAGACCAACAACGTGGCCACCGTTTACGACCACGAGACCACGTGTTCCATATGCATCTCGGATTACGAGGAGTCGGAGATTTTAAGGATGATGCCGCAATGCCGCCACTACTTTCACAAGGATTGTGTTGACGTGTGGCTCAAGGTTCATGCATCGTGTCCCATTTGTAGAAACTCCTTGGTGGAAGCTCGTAACAATAACTTAGAAGAAGTCTAA 483 0.4803 MHNPMPNLSPSVSTVPPSSLATNNELDTFTKLFLLLIFLSLFLRVCYVYISMRRDRNLNANNIQHGDAQNNTTGLPYNVINSYHTFPYSKTNNVATVYDHETTCSICISDYEESEILRMMPQCRHYFHKDCVDVWLKVHASCPICRNSLVEARNNNLEEV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01962 160 SMART ring_2 104 145 IPR001841 -
Cca07g01962 160 SUPERFAMILY RING/U-box 97 153 - -
Cca07g01962 160 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 6 156 - -
Cca07g01962 160 Coils Coil 147 160 - -
Cca07g01962 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 151 IPR013083 -
Cca07g01962 160 PANTHER RING-H2 FINGER PROTEIN ATL67 6 156 IPR044289 GO:0016567|GO:0016740
Cca07g01962 160 CDD RING-H2_PA-TM-RING 103 146 - -
Cca07g01962 160 Pfam Ring finger domain 103 146 IPR001841 -
Cca07g01962 160 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01962 Cca-Chr7 47100689 47101171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01962 32 149 C3H Transcription Factor Family AT2G34990 34.959 4.58e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01962 - - ccaj:109814695 291.967