Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01961 ATGTCCCCTCCTCACCCTCACAGCTACTTCTCCAACCTCGGCCTCGGCTACTCCATCGCCATAGCCCTCGCCTTCCTCTTCCTCCTCTCCACCCTCCTCCTCTCCTCCTACCTCTgctgccgcgcccgccgcaaccgcacccgcgccgccgcccaagccgcctccAGAGCCAGGTCTGCCGACGGCGGGGTCATCCTCCCGCGCGTGATCTTcgtggccgaggacgaggacgaggaggaggagAGCGCCGCCGTGGGGCTGGAGCAGAGCGTCATAAACTCCTACCCGAGGTTCGAGTTCAGTAACAGGGAGGGCGCGCGGAGCAATAACACCACGTGCTCCATTTGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGCCGCCATTTCTTCCACCAGTGTTGTCTTGATTCCTGGCTCAAACTGAACGGCTCTTGCCCCGTCTGCCGTAACTCCCCCCTCCCCACGCCGCTCTCCACGCCGCTGCAGGAGGTCGTTCCTCTCTCCCAATACGCCGCTGATAGGAGGCGAACTAGGTGA 555 0.5171 MSPPHPHSYFSNLGLGYSIAIALAFLFLLSTLLLSSYLCCRARRNRTRAAAQAASRARSADGGVILPRVIFVAEDEDEEEESAAVGLEQSVINSYPRFEFSNREGARSNNTTCSICLCEYKDSEMLRMMPECRHFFHQCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRTR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01961 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
Cca07g01961 184 SUPERFAMILY RING/U-box 112 160 - -
Cca07g01961 184 PANTHER RING-H2 FINGER PROTEIN ATL67 6 182 IPR044289 GO:0016567|GO:0016740
Cca07g01961 184 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Cca07g01961 184 PANTHER RING-H2 FINGER PROTEIN ATL67 6 182 - -
Cca07g01961 184 Pfam Ring finger domain 112 155 IPR001841 -
Cca07g01961 184 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01961 Cca-Chr7 47088280 47089224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01961 1 174 C3H Transcription Factor Family AT5G07040 40.571 6.03e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01961 - - lja:Lj1g3v2807930.1 233.417