Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01956 ATGGAAAGCCAAGACAACAGCCCCTTCATGTTCACGACGCCTTCGGTGTTTCAAAACCCTAGTTTGGAGCCTCAAGAGCAGGGTCTATGTGACATTGACTGGGGTGACATTTTCTCTGCCCAAAACAGTACTAGTATTGAACGTGGTTCTTCGTCTTGTGTGGTGGCTGAAAACaaggaaaagggaaacgataaggagaaaaggaaagTGGGGAGGATGAAGAAAACAACACGAGTGCCGAGGTTTGCGTTTCAAACTAGAAGTGCTGATGATATTTTGGATGATGGTTATCGCTGGAGGAAATATGGGCAGAAAGCTGTGAAGAATAGCACTTATCCAAGAAGCTACTACCGGTGCACGCATCACACGTGCAATGTGAAGAAACAAGTGCAAAGGCTATCGAAAGACACAAGCATTGTGGTGACGACTTACGAGGGAATTCACAACCACCCATGCGAGAAGCTCATGGAAACTCTAACCCCTCTTCTCAAGCAAATACAGTTTCTTGCTACCTTGTAA 519 0.4297 MESQDNSPFMFTTPSVFQNPSLEPQEQGLCDIDWGDIFSAQNSTSIERGSSSCVVAENKEKGNDKEKRKVGRMKKTTRVPRFAFQTRSADDILDDGYRWRKYGQKAVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLATL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01956 172 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 48 168 - -
Cca07g01956 172 Pfam WRKY DNA -binding domain 94 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g01956 172 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 168 IPR044810 GO:0003700
Cca07g01956 172 Gene3D WRKY domain 77 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca07g01956 172 SUPERFAMILY WRKY DNA-binding domain 86 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca07g01956 172 MobiDBLite consensus disorder prediction 1 22 - -
Cca07g01956 172 ProSiteProfiles WRKY domain profile. 88 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g01956 172 SMART WRKY_cls 93 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01956 Cca-Chr7 47016531 47017836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01956 57 172 WRKY Transcription Factor Family AT5G41570 68.966 6.44e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca07g01956 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01956 - - ccaj:109814720 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01956 07 47016531 47017836 Cca07g01956 07 47016531 47017836 ECH
Cca07g01956 07 47016531 47017836 Cca01g02339 01 52012511 52017404 PCT