Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01953 atgcatgatgcatgcattcatgccatgacccatgaCACGGACCCACACGCTATTGAATGCCTCGTGCCACCCACGTTTTCGATTCCAAGCGCGGTTTACAATCGCCTGTGTTCATGTGTACACCGCCACCATGTGACCCAATCGCTCACCGTCCATGCCGTTGACCGTCAAACCAGCGTTTCCAACCGTCCGATGTTGGACCATAGGATTCTCATGCTATCGAAACCTTTCCTTATCTCTTCATCCACCACCGGCGTTTGTTGTCAAGTGCCAGTGGAGAATCTCTCCTCAGATATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAGGGGTCCCCATATCCAAGGGGTTACTATAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAAGTTGAGAGGAACAGATCAGACCCAACAATGTTTATTGTGACATACACTGCTGAGCACAACCACCCTGCTCCTACTCACAGAAACTCCCTTGCTGGTTCCACACGCCAGAAGCCATTGGCACCACAAGCCGCCACAAATGGAGACTCTGACAAGACCCCAACAAAGCCCTCTTCCCCTGCCACCTCAGGGGCAGAGGAAGAGGTTCCACCACAAGGGGAAAAGTCAGAGAGCagagaagagaaagaggatgatgttgatgaggaagaagatgaATTTGGAGGGTTGTCTGATATGGTGCTGACAGATGATTTCTTTGAAAGTTTGGATGAACTGAGTCAACTCACTGCTCCTTCTGTTGTCACTGGAGATTGCTTCAGTGACCCCTTTTCAACTATTGCAATCCCATCTTGGGTGGCTGGTGGATGCAGATGA 831 0.4573 MHDACIHAMTHDTDPHAIECLVPPTFSIPSAVYNRLCSCVHRHHVTQSLTVHAVDRQTSVSNRPMLDHRILMLSKPFLISSSTTGVCCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQAATNGDSDKTPTKPSSPATSGAEEEVPPQGEKSESREEKEDDVDEEEDEFGGLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSTIAIPSWVAGGCR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01953 276 Gene3D WRKY domain 83 158 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca07g01953 276 Pfam WRKY DNA -binding domain 98 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g01953 276 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 87 274 - -
Cca07g01953 276 MobiDBLite consensus disorder prediction 213 229 - -
Cca07g01953 276 ProSiteProfiles WRKY domain profile. 91 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g01953 276 SUPERFAMILY WRKY DNA-binding domain 95 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca07g01953 276 SMART WRKY_cls 96 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g01953 276 MobiDBLite consensus disorder prediction 154 194 - -
Cca07g01953 276 MobiDBLite consensus disorder prediction 151 231 - -
Cca07g01953 276 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 87 274 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01953 Cca-Chr7 46987144 46991966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01953 87 259 WRKY Transcription Factor Family AT4G01250 60.116 4.63e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca07g01953 WRKY 2.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01953 K13425 - gmx:100798084 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01953 07 46987144 46991966 Cca02g02209 02 42597522 42598771 ECH
Cca07g01953 07 46987144 46991966 Cca08g00739 08 13995048 13996432 ECH
Cca07g01953 07 46987144 46991966 Cca07g01953 07 46987144 46991966 ECH
Cca01g02328 01 51837452 51838739 Cca07g01953 07 46987144 46991966 ECH
Cca07g01953 07 46987144 46991966 Cca01g02328 01 51837452 51838739 PCT