Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01950 ATGACTACTATTTCTTGTATGCCACTTTCCTTTCTTTGTTGCCTCTATGTAATAATGGTAATAACTGAAGCCAGCTTCACACCAGAATACCAAAGAGCCAAAATCTGTTCCAATGAAAATGGGAACTACACAGTGAATAGCACGTACCATAGCAACCTCAAGACCCTCTTATCCACCCTCACTTCCCACACAGAAATCAACTATGGTTTCTACAATTTCTCGTATGGCCAAAACACAGACAAAGTATACGCCATTGGGCTGTGTAGGGGAGATGTTGAGCCAGACGAGTGTCGCACTTGCCTCAACTATTCTAGACTCATTCTCACACAATTTTGTCCAAATCAAAAAGAGGCAATCAAGTGGGAAGCAAAGTGCATGCTGCGCTACTCGAACCGTCCAATATTTCGCACCATGGAAACTGATCCTCCCTTTAGAATGAATAACCTAAACAATGCAACGGATGTGGATGAGTTCAACAAAGTGTTGGGTGAGTTGGTGAGAAGTCTAAGAGGCAAAGCTGCATCAGGTGACTCTCGTCGTAAGTATGACTCGGGCAATGCAGTTGCCGCAAATTTTCAAACCATATACGGTCTTGTGCAGTGTACACCTGATTTGTCAAGCCAAGATTGTGGTGATTGCTTGGACTGGACTATCTCAGAAATCCCTAGAAATTTTAAAGACAAGGTTGGTGTTGTGTTGCTTAAACCCAGTTGTAATGTCAGATTTGAGATTTATCCCTTCTTCGACCATACCACAATATTGGACCCAGTTGTACCACCGGTATCACCTTCACCAAAAGAAAAGGACAACTCATTGCGGATTACAATTACCGTAGTTGTGACTATTTTTCTCGTTCTTCTTGTTGTTCTGCTTATTGTTATTAGCAGATATTTTGGAAGGAAGCAAGCAAGGAAAAATCTTTTGCCTGATGAAGATGAACACGATGAAGAAATTCAAATGGTTGAATCATTGCAATTCGATTTAGACACAATACAAGTTGCAACAAATAACTTCTCAGATTCTAATAAACTGGGAGAAGGCGGGTTTGGAACTGTTTACCAAGGCTTACTCTCTAATGGACAAGGGattgctgtcaaaagactgtcaagcaattctggccaaggagacatggaatttaagaatgaagttcttttattggctaaacttcaacatcgaaatttagttagactacttggtttcagtttggcagggagagaaaaactacttgtttatgaatTTGTTCCTAATAAAAGCCTTGACTACTTCATATTTAATCCAACAAAGAAAGCACAAttggattgggaaaggcgttacaaaatcattagaggtgttgctcgaggtcttctctatcttcatgaggattcaagattgcgcattatacatcgtgatctcaaagcaagtaatgttctcttagatgaagaaatgattcctaagatatcagattttggcatggcaagattAATTGTTGCAGATCAAACACAAGAGAATACAAGTAGAGTTGTTGGAACCTAG 1512 0.3201 MTTISCMPLSFLCCLYVIMVITEASFTPEYQRAKICSNENGNYTVNSTYHSNLKTLLSTLTSHTEINYGFYNFSYGQNTDKVYAIGLCRGDVEPDECRTCLNYSRLILTQFCPNQKEAIKWEAKCMLRYSNRPIFRTMETDPPFRMNNLNNATDVDEFNKVLGELVRSLRGKAASGDSRRKYDSGNAVAANFQTIYGLVQCTPDLSSQDCGDCLDWTISEIPRNFKDKVGVVLLKPSCNVRFEIYPFFDHTTILDPVVPPVSPSPKEKDNSLRITITVVVTIFLVLLVVLLIVISRYFGRKQARKNLLPDEDEHDEEIQMVESLQFDLDTIQVATNNFSDSNKLGEGGFGTVYQGLLSNGQGIAVKRLSSNSGQGDMEFKNEVLLLAKLQHRNLVRLLGFSLAGREKLLVYEFVPNKSLDYFIFNPTKKAQLDWERRYKIIRGVARGLLYLHEDSRLRIIHRDLKASNVLLDEEMIPKISDFGMARLIVADQTQENTSRVVGT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01950 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Cca07g01950 503 ProSiteProfiles Gnk2-homologous domain profile. 140 247 IPR002902 -
Cca07g01950 503 ProSiteProfiles Protein kinase domain profile. 338 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01950 503 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 503 - -
Cca07g01950 503 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Cca07g01950 503 Pfam Salt stress response/antifungal 150 244 IPR002902 -
Cca07g01950 503 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 503 - -
Cca07g01950 503 Gene3D Transferase(Phosphotransferase) domain 1 414 503 - -
Cca07g01950 503 SUPERFAMILY Protein kinase-like (PK-like) 319 503 IPR011009 -
Cca07g01950 503 Gene3D Phosphorylase Kinase; domain 1 301 413 - -
Cca07g01950 503 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Cca07g01950 503 Pfam Protein tyrosine and serine/threonine kinase 341 496 IPR001245 GO:0004672|GO:0006468
Cca07g01950 503 SMART serkin_6 338 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01950 503 Gene3D - 31 133 IPR038408 -
Cca07g01950 503 Gene3D - 143 247 IPR038408 -
Cca07g01950 503 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01950 Cca-Chr7 46901086 46906304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01950 34 503 Receptor kinase-like Gene Family AT4G38830 48.755 2.44e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g01950 PK_Tyr_Ser-Thr 1.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01950 - - gmx:100775428 719.924