Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01948 ATGGTGTCCCTCAACCCAAACCCTCCTCAAACTTTTCACTTCTTCGACACCTTCAACATGGAGGTTCCCAATAAGAAGATCCGAAAGCCTTATACCATTACCAAGTCCAGAGAGAACTGGACCGACCAAGAGCATGACAAGTTTCTAGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAGATAGAAGCATTTGTAGGTTCAAAAACAGTAATCCAGATAAGGAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGCACAAGTGAACATGTACCTCCCCCTCGTCCGAAGAGAAAAGCTGCTCATCCATACCCACAAAAAGCTTCTAAAAATGCTCTTACTATACCCCAAGTTAAGAGGCCATTGCAGTCTTCATCTTCTCTATCTGAATCATCATACATTTATAGGCCAGACTCATCATCTGTGCTTAGAACTCCAGTTAGCAGTGTGCCATTGCCATCTTGGAATTATAACGTTACACCACCAGTCAGTCTTCCTCAAGTGACTAAAGATGATAGGATGTTGAGTCAACAAGCCATTCCTTTCAATCACTGCTATAGCAGTAGTAATGAGAGCACTCCTAGGGGTTGGCCAAGTAGCAAACACACAGATCAGGCTGACCAAGGAAAGCCAATTAAAGTAATGCCGGATTTTGCACAAGTCTATAGCTTTATTGGCAGTGTATTTGATCCAAAAGCAACTAATCATCTACAGACGCTGAAGCAGATGGATCCAATAAATGTGGAAACTGTATTGTTATTGATGAGAAACCTCTCCACCAATTTAAGGAGTCCTGAATTTGAGAATGATAAAAGGTTGCTGTCATCATACAATGCTAACTTGGAGAAAGGAAAATCCGGTAGTCATCTCAGAAACTCCCTTACTGGCAGATCAGAGAGTGCTGTCTTAACTGCTTAA 927 0.4175 MVSLNPNPPQTFHFFDTFNMEVPNKKIRKPYTITKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTIPQVKRPLQSSSSLSESSYIYRPDSSSVLRTPVSSVPLPSWNYNVTPPVSLPQVTKDDRMLSQQAIPFNHCYSSSNESTPRGWPSSKHTDQADQGKPIKVMPDFAQVYSFIGSVFDPKATNHLQTLKQMDPINVETVLLLMRNLSTNLRSPEFENDKRLLSSYNANLEKGKSGSHLRNSLTGRSESAVLTA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01948 308 MobiDBLite consensus disorder prediction 113 127 - -
Cca07g01948 308 MobiDBLite consensus disorder prediction 87 127 - -
Cca07g01948 308 PANTHER SWI/SNF COMPLEX-RELATED 13 301 - -
Cca07g01948 308 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cca07g01948 308 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Cca07g01948 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Cca07g01948 308 Gene3D - 39 87 - -
Cca07g01948 308 PANTHER MYB TRANSCRIPTION FACTOR 13 301 - -
Cca07g01948 308 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Cca07g01948 308 MobiDBLite consensus disorder prediction 187 208 - -
Cca07g01948 308 CDD SANT 39 82 IPR001005 -
Cca07g01948 308 MobiDBLite consensus disorder prediction 287 308 - -
Cca07g01948 308 SMART sant 36 84 IPR001005 -
Cca07g01948 308 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Cca07g01948 308 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01948 Cca-Chr7 46861945 46866641 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca07g01948 Myb_DNA-binding 4.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01948 - - gmx:100791774 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01948 07 46861945 46866641 Cca07g01948 07 46861945 46866641 ECH
Cca01g02318 01 51654932 51660845 Cca07g01948 07 46861945 46866641 ECH
Cca07g01948 07 46861945 46866641 Cca01g02318 01 51654932 51660845 PCT