Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01946 ATGGCCACCGCTCCTTCGCTTCTACACTCATCTGGGTCTTCATTTTTCGCTCAATTTCGCGCCTTTCCAATCCcttcttcttcttcttcttcACTGTTCCTTCGTGGAAATAGGCATGGGAGTGCAGTGGTGTCAGTGAAGGCCACTGCTTCTGGGGTTGTGTTGGTGGAGAAGTCTGAGGCAGAGAACGCCAATAGGCTCAAAACTGCTTACATTGAGAAAATTGTTCCCCTGCTCATGGAAGAGTTCTCTTACACTAACAAGCACCAGGTGCCTAAAATTGAGAAAATTGTGGTTAACTGTGGTATTGGAGATGCTGCACAGAATTCAAAGGGTTTGGATGCAGCAATAAATGATCTAGCACTGATCACAGGGCAGAGACCTATTAAGACTCGGGCCAGGGCTTCTCTAGCCACCTTTAAGATCAGGGAAGGTCAACCGCTTGGGATTGCTGTGACATTAAGAGGAAATATAATGTACTCATTCCTGGACCGAGTCATCAACTTAGGACTTCCTAGGACAAGAGATTTCCAAGGTCTGAACCCCAACAGCTTTGATGGGCATGGGAATTACAGCATTGGCATCAAGGACCAGGGTGTGTTCCCTGAGATCAGAGCCGATGTTATTGGTAAGCCTAGGGGAATGGACATCTGCATTGCGACGACGGCTAATACCGATCAAGAAGCGCAGAGATTATTGGCTCTCATGGGCATGCCTTTCAGAGAGGGAGGTGGTCCTGCTGCTGCCGCTGGTCGCAAAAAGAAGCTCAAGTCTCATCATTTTGATTCAAAATCAAAGGGAAGAGGAAGGAAGTGA 816 0.4669 MATAPSLLHSSGSSFFAQFRAFPIPSSSSSSLFLRGNRHGSAVVSVKATASGVVLVEKSEAENANRLKTAYIEKIVPLLMEEFSYTNKHQVPKIEKIVVNCGIGDAAQNSKGLDAAINDLALITGQRPIKTRARASLATFKIREGQPLGIAVTLRGNIMYSFLDRVINLGLPRTRDFQGLNPNSFDGHGNYSIGIKDQGVFPEIRADVIGKPRGMDICIATTANTDQEAQRLLALMGMPFREGGGPAAAAGRKKKLKSHHFDSKSKGRGRK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01946 271 SUPERFAMILY RL5-like 66 241 IPR022803 -
Cca07g01946 271 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 60 242 IPR002132 GO:0003735|GO:0005840|GO:0006412
Cca07g01946 271 Pfam ribosomal L5P family C-terminus 147 240 IPR031309 -
Cca07g01946 271 Pfam Ribosomal protein L5 87 143 IPR031310 -
Cca07g01946 271 MobiDBLite consensus disorder prediction 252 271 - -
Cca07g01946 271 PANTHER 54S RIBOSOMAL PROTEIN L7, MITOCHONDRIAL 60 242 - -
Cca07g01946 271 MobiDBLite consensus disorder prediction 244 271 - -
Cca07g01946 271 Hamap 50S ribosomal protein L5 [rplE]. 64 242 IPR020930 GO:0003735|GO:0005840|GO:0006412
Cca07g01946 271 ProSitePatterns Ribosomal protein L5 signature. 120 136 IPR020929 GO:0003735|GO:0005840|GO:0006412
Cca07g01946 271 Gene3D - 58 242 IPR022803 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01946 93 198 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 27.358 5.62e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01946 K02931 - gmx:100818896 466.848