Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01944 ATGTCAATCTTCGACGGGGCTTTCATGAACACGCAACTCTCCAAACGCACTTGGATCTTCGGTCTCCGTCTCTGGGTCGTGATCGGAATTCTCATCGGCGTTTTCATCGTCTTCACTCTCTTCCTCATCTCGCTCTGCCTCGTCTCCCGCCGGAGCCGCCGCCGCCGGAGCTCCGGCGGGTACAAGGTCGCCGGAGCCCTCGACGCGTCGAAGGAAATCCACACGATCGTGCACCTTCCTGGCGCGCACATGCTCCGACCGCCGGCGCCGGCGAAGGTGCCGGAGATCCACGTGGAGATGGGGAAGGCGGAGCACCGGGTGGTGGTGCAGTGTGATAGGGTTTCGAGTGAAGAGAGCAAGGGAACGGTGGGGAGTGGGTATGAAACGACGTCGTCGTTtggaagtgggagtgttggtgggcttgggcttgggcttgggcctgggtctgggcCCGAGGTTTCGCATCTTGGGTGGGGGAGGTGGTACACTCTGAGGGAGCTTGAGGATGCCACTGGAGGGTTGTGTCCTGAAAATGTTGTTGGTGAAGGTGGCTATGGCATTGTGTATCATGGGGTCCTCACTGATGGTACCAAAATTGCTGTCAAGAACCTCTTGAATAACAAGGGCCAAGCTGAGAAAGAATTTAAGGTAGAGGTTGAAGCAATTGGTCGAGTGCGACACAAAAATCTGGTTAGGTTGCTTGGTTACTGTGTTGAGGGAGCCTACAGAATGCTTGTGTATGAATACGTAGACAATGGCAATCTAGAACAATGGCTGCATGGGGATGTTGGAGCTGTAAGCCCTTTGACATGGAATATACGCATGAATGTTATATTGGGAACTGCAAGAGGATTGGCCTATCTTCATGAGGGTCTTGAACCGAAAGTTGTCCACCGAGATGTTAAATCAAGCAACATTCTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACTGGAATGCTTACTGAGAAGAGTGATATCTATAGCTTTGGGATACTTATTATGGAGATAATTACCGGAAGAAGTCCTGTTGATTATAGTAGACCACAAGGAGAGGTCAATTTAATAGATTGGTTGAAGACTATGGTTGGGAATCGAAAATCCGAGGAAGTAGTTGATCCTAAGCTTCCTGAGATGCCATCTTCAAAGGCTCTAAAACGTGCACTGTTGATCGCTCTAAGGTGTGTCGATCCCGATGCAACAAAGAGGCCAAAAATGGGACATGTGATCCACATGCTTGAGGCAGACGACCTGCTATTCCACAATGAACACAGAACTGAGGGAGAGTCTTCCCGTTCTCATCGAGATTATCAACTTGAGCATAAGGACTCCAAGTTAGATAAGAGAACGGATGGAGGTGTCATTGATCAAAGTGAAGATGCTAGTAGTAGAAATCATCATCAGCCCACTAGATGGAGATGA 1518 0.473 MSIFDGAFMNTQLSKRTWIFGLRLWVVIGILIGVFIVFTLFLISLCLVSRRSRRRRSSGGYKVAGALDASKEIHTIVHLPGAHMLRPPAPAKVPEIHVEMGKAEHRVVVQCDRVSSEESKGTVGSGYETTSSFGSGSVGGLGLGLGPGSGPEVSHLGWGRWYTLRELEDATGGLCPENVVGEGGYGIVYHGVLTDGTKIAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPLTWNIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYSRPQGEVNLIDWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNEHRTEGESSRSHRDYQLEHKDSKLDKRTDGGVIDQSEDASSRNHHQPTRWR 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01944 505 SUPERFAMILY Protein kinase-like (PK-like) 154 446 IPR011009 -
Cca07g01944 505 ProSiteProfiles Protein kinase domain profile. 174 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01944 505 SMART serkin_6 174 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01944 505 MobiDBLite consensus disorder prediction 457 499 - -
Cca07g01944 505 Gene3D Phosphorylase Kinase; domain 1 158 249 - -
Cca07g01944 505 Pfam Protein kinase domain 178 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01944 505 CDD STKc_IRAK 180 446 - -
Cca07g01944 505 MobiDBLite consensus disorder prediction 457 505 - -
Cca07g01944 505 PANTHER OS01G0323000 PROTEIN 1 497 - -
Cca07g01944 505 ProSitePatterns Protein kinases ATP-binding region signature. 180 202 IPR017441 GO:0005524
Cca07g01944 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Cca07g01944 505 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 497 - -
Cca07g01944 505 Gene3D Transferase(Phosphotransferase) domain 1 250 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01944 Cca-Chr7 46810370 46814063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01944 107 446 Receptor kinase-like Gene Family AT4G02010 43.023 5.69e-92 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca07g01944 Pkinase 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01944 - - gmx:100817295 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01944 07 46810370 46814063 Cca01g02316 01 51628296 51631435 PCT