Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01938 ATGGCGATGAAGGGAGAGGAGGAAGTGGACCCGGTGGAGGAGATCCAGCGAGTCATAGAAACGGTGGTTCAGTTCGGAGAGTACCGAAGGACGCAGAAGAAGGAGAGCCACAACCTCGTGCGTCGCTTCAAGCTCATGTTGCCTCTCTTGGAAGAGCTTCGTGACCTGCCCAAACCCTTACACCAACACGGCCTTGCATGGTTGGCCAAACTCAAGGACGCCCTTTTGTCTGCCAAGGACTTGCTCAAATTGTGCAGCCAAGGAAGCAAGATTCACCTCGCTTTGGAGTGCGAGTCGGTTATGATCAACTTTCAGAAAATTTATGATAAATTAAGCCAAGTGTTTGCTTGTGTGCCTTGTGACGAATTGAGTGTCTCAGATGAAGTCAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGCGAGCCAGGAGAAGAACTGATACACAAGATATAGAACTAGCAATGGATATGATGGTAGTGTTCTCTGATGAGGATGATAGAAATGCTGATAGTGCTATCATTGAGAGGCTGGCTAAAAAGCTGGAGCTTCATAGTGTGGAGGATCTCAATGTAGAAACAATGGCTATTAGGAACCTTGCTAAAGAAAGAAAAGGGCAACAAAACGAGAGTACTCAGCGAATAATTGGCCTTCTTAACAGGTTCAAACAAATTGCTGGAATGGAAGAAACCAACGTCCTTGATGATCCTGCCATGCCAAAGGTTCTTGAGAGGAGCACCTCTTTGATCATTCCTCATGAGTTTCTCTGCCCTATAACACTAGAAATCATGACAGATCCTGTTATTGTCACAACTGGACAGACATATGAAAGGGAAAGCATAGAGAAATGGTTCCAAGCCAACCATAACACATGCCCAAAGACTAGGAAACCTTTGGAACATCTATCATTGGCACCAAACTGTGCATTGAAAAGCTTGATTGAAGAATGGTGCGAGAACAACAACTTCAAACTTCCCAAAAAGTACAATTCTTCAAGTCAAGAAAGCTCTACCATAGACAGCAAAGATGAAATTCCATCTTTGGTTGGGAGCCTATCCTCTATTCATTTAGAAGAGCAAAGAAGGGCAGTGGAGAAGATACGTATGATATCAAAGGAAAGTCCTGAGAATAGGGTTTTGGTGGCTGAACTTGGAGGAATTCCAGCCATAGTGCAACTACTATCCTATCCAGACTCAAAAATTCAGGAGCATGCTGTGACAGCACTTTTGAATCTATCAATTGATGAGGGTAACAAGAGGCTTATATCCAAAGAAGGTGCCATTCCAGCTATCATAGAAGTTTTGGAGAATGGGAGTTGTGTGGCTAAGGAAAACTCAGCAGCTACATTATTCAGCTTGTCAATGCTTGATGAGATCAAAGAGATTATTGGACAATCAAATGGGATACCCCCTTTGGTAAAGTTGTTGAGGAATGGAACAGTAAGAGGGAAGAAAGATGCTGCTACAGCTCTTTTTAACCTATCTCTCAACCATGCAAATAAAGGTAGGGCCATTAGGGCTGGCATTGTGACACCCTTGCTTCAATTGCTCACGGACACAAACTTGGGAATGATTGATGAGGCACTCTCCATTCTGTTACTACTTGTGTTGAATTCAGAAGGAAGACAAGAGATTGGACAACTCTCCTTCATTGAAACCCTAGTTGGGTTCATGAGAGATGGGAGTCCCAAGAACAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGCTCAAATAACTCAAAGTTTATTTTGGCAGCACTTCAGTTTGGAGTGTATGATCATCTAGTGGAGATCAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATTGCAATCTTAGATCTCATAAGCAAGAGCGAGCAAATTTAA 1875 0.4315 MAMKGEEEVDPVEEIQRVIETVVQFGEYRRTQKKESHNLVRRFKLMLPLLEELRDLPKPLHQHGLAWLAKLKDALLSAKDLLKLCSQGSKIHLALECESVMINFQKIYDKLSQVFACVPCDELSVSDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIIERLAKKLELHSVEDLNVETMAIRNLAKERKGQQNESTQRIIGLLNRFKQIAGMEETNVLDDPAMPKVLERSTSLIIPHEFLCPITLEIMTDPVIVTTGQTYERESIEKWFQANHNTCPKTRKPLEHLSLAPNCALKSLIEEWCENNNFKLPKKYNSSSQESSTIDSKDEIPSLVGSLSSIHLEEQRRAVEKIRMISKESPENRVLVAELGGIPAIVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISKEGAIPAIIEVLENGSCVAKENSAATLFSLSMLDEIKEIIGQSNGIPPLVKLLRNGTVRGKKDAATALFNLSLNHANKGRAIRAGIVTPLLQLLTDTNLGMIDEALSILLLLVLNSEGRQEIGQLSFIETLVGFMRDGSPKNKECAASVLLELCSNNSKFILAALQFGVYDHLVEIKQNGTNRAQRKAIAILDLISKSEQI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01938 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 324 IPR013083 -
Cca07g01938 624 SUPERFAMILY RING/U-box 251 326 - -
Cca07g01938 624 Coils Coil 126 146 - -
Cca07g01938 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 509 IPR000225 GO:0005515
Cca07g01938 624 Gene3D - 6 119 IPR036537 GO:0007166
Cca07g01938 624 Gene3D - 325 623 IPR011989 -
Cca07g01938 624 SUPERFAMILY ARM repeat 342 619 IPR016024 -
Cca07g01938 624 CDD RING-Ubox_PUB 255 297 IPR045210 -
Cca07g01938 624 ProSiteProfiles U-box domain profile. 250 324 IPR003613 GO:0004842|GO:0016567
Cca07g01938 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Cca07g01938 624 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 9 622 - -
Cca07g01938 624 SMART arm_5 456 496 IPR000225 GO:0005515
Cca07g01938 624 SMART arm_5 538 578 IPR000225 GO:0005515
Cca07g01938 624 SMART arm_5 415 455 IPR000225 GO:0005515
Cca07g01938 624 SMART arm_5 497 537 IPR000225 GO:0005515
Cca07g01938 624 SMART arm_5 374 414 IPR000225 GO:0005515
Cca07g01938 624 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Cca07g01938 624 Pfam Armadillo/beta-catenin-like repeat 458 495 IPR000225 GO:0005515
Cca07g01938 624 SMART Ubox_2 254 317 IPR003613 GO:0004842|GO:0016567
Cca07g01938 624 Pfam U-box domain 251 321 IPR003613 GO:0004842|GO:0016567
Cca07g01938 624 PANTHER U BOX DOMAIN-CONTAINING 9 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01938 Cca-Chr7 46716346 46719879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01938 12 624 U-box Gene Family AT5G42340 63.785 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01938 - - gmx:100789656 1002.28