Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01933 ATGGGTTTCCCCGTAGGGTACCCGGAAGTGCTGGTCCCAAACCTCTTCCTCCACGCGCTCTCCCTCCTCGCCTGCCTCCGCTCCCTCGTCTTCTCCCTCTTCCGCCTGCTCCGCCTCTCCGACCTCCTCGACACCGACGCCGCCTGGCCCGAGCCCCCGCCCCCGCCCTCCCCGCCGCGCGCCCCCACGCTCTCCGCGCTCCTCATCCGGGACCTCCTCCCCGTCGCGCCCTTCGCCGACCTCGCCGACGCCTCCCCTCCTCCGTCGTGCGCCGTGTGCTTTAACGAGTTCCGGGCGGAGGAGGAAATCCGGTGCATGGCGAACTGCAAGCACATATTCCACCGCGCGTGCGTGGACCGTTGGATCGATCACGATCAGAAGACGTGTCCCCTCTGCCGAACGCCCTTCGTCCCGCATCACAAGCTCGATGAGTATAACCACCGATTATGGGCCGCTTCTGGGGTTTCACACTTTTATCACGAGGATTACGCTGCTTCACTCTGA 504 0.6548 MGFPVGYPEVLVPNLFLHALSLLACLRSLVFSLFRLLRLSDLLDTDAAWPEPPPPPSPPRAPTLSALLIRDLLPVAPFADLADASPPPSCAVCFNEFRAEEEIRCMANCKHIFHRACVDRWIDHDQKTCPLCRTPFVPHHKLDEYNHRLWAASGVSHFYHEDYAASL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01933 167 Pfam Ring finger domain 89 133 IPR001841 -
Cca07g01933 167 SUPERFAMILY RING/U-box 89 144 - -
Cca07g01933 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 163 - -
Cca07g01933 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 141 IPR013083 -
Cca07g01933 167 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 163 - -
Cca07g01933 167 SMART ring_2 90 132 IPR001841 -
Cca07g01933 167 ProSiteProfiles Zinc finger RING-type profile. 90 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01933 Cca-Chr7 46639751 46640745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01933 1 166 C3H Transcription Factor Family AT1G63840 41.765 5.42e-46 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01933 K16281 - gmx:100813224 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01933 07 46639751 46640745 Cca01g02295 01 51369272 51370058 PCT