Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01931 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGAGCACCAGTGTGTTACTATTGCCCACCAACTTTTGAAGAGCGCGAATCTTTAACTTCTAATGATGGTACAAATGCTTCGCGCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGGATCCATGCCTGATACTTTCCAGCCCCCTCCTGTGCCTCTACCTTATGATACAGTATTGGGAGGTTTTGCATCAACAGATTCCGAATCTGGAAGAGAAACAGTTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGCTGATGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCCTACATCTCCAAGGAAGGCAGAACTATCAAAATCAAATGTAACTCAAGTGTTAGTGACAGAAGAGGAGGATGTTTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAGAAATTTGACAAAATGTGAACACCATTTTCACCTTTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGaaattttccaGGCCAGACTCATCATCTGTGCTTAGAACTCCAGTTAGCAGTGTGCCATTGCCATCTTGGAATTATAACGTTACACCACCAGTCAGTCTTCCTCAAGTGACTAAAGATGATAGGATGTTGAGTCAACAAGCCATTCCTTTCAATCACTGCTATAGCAGTAGTAATGAGAGCACTCCTAGGGGTTGGCCAAGTAGCAAACACACAGATCAGGCTGACCAAGGAAAGCCAATTAAAGTAATGCCGGATTTTGCACAAGTCTATAGCTTTATTGGCAGTGTATTTGATCCAAAAGCAACTAATCATCTACAGACGCTGAAGCAGATGGATCCAATAAATGTGGAAACTGTATTGTTATTGATGAGAAACCTCTCCACCAATTTAAGGAGTCCTGAATTTGAGAATGATAAAAGGTTGCTGTCATCATACAATGCTAACTTGGAGAAAGGAAAATCCGGTAGTCATCTCAGAAACTCCCTTACTGGCAGATCAGAGAGTGCTGTCTTAACTGCTTAA 1062 0.4105 MGGCCCSARKPHLQGAPVCYYCPPTFEERESLTSNDGTNASRNAGFLVGLNLEGSMPDTFQPPPVPLPYDTVLGGFASTDSESGRETVSSFETLITREDADESDCKAQANSAPTSPRKAELSKSNVTQVLVTEEEDVCPICLEEYDVENPRNLTKCEHHFHLSCILEWMERSDSCPICDQKFSRPDSSSVLRTPVSSVPLPSWNYNVTPPVSLPQVTKDDRMLSQQAIPFNHCYSSSNESTPRGWPSSKHTDQADQGKPIKVMPDFAQVYSFIGSVFDPKATNHLQTLKQMDPINVETVLLLMRNLSTNLRSPEFENDKRLLSSYNANLEKGKSGSHLRNSLTGRSESAVLTA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01931 353 MobiDBLite consensus disorder prediction 107 121 - -
Cca07g01931 353 Pfam Ring finger domain 137 178 IPR001841 -
Cca07g01931 353 SMART ring_2 138 178 IPR001841 -
Cca07g01931 353 MobiDBLite consensus disorder prediction 234 257 - -
Cca07g01931 353 MobiDBLite consensus disorder prediction 101 121 - -
Cca07g01931 353 MobiDBLite consensus disorder prediction 234 253 - -
Cca07g01931 353 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Cca07g01931 353 MobiDBLite consensus disorder prediction 332 353 - -
Cca07g01931 353 PANTHER MYB TRANSCRIPTION FACTOR 182 346 - -
Cca07g01931 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 190 IPR013083 -
Cca07g01931 353 SUPERFAMILY RING/U-box 131 185 - -
Cca07g01931 353 PANTHER SWI/SNF COMPLEX-RELATED 182 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01931 Cca-Chr7 46588524 46593467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01931 1 181 C3H Transcription Factor Family AT4G00335 59.016 1.96e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca07g01931 zf-RING_2 1.1e-11 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01931 - - gmx:100812687 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01931 07 46588524 46593467 Cca01g02284 01 51232481 51236738 PCT