Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01929 ATGACTAACGGGGAACCCTTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAAGGTGGTTATGATGCTGTTTGTAAGAACAGGTTGTGGGATTTGGTGGGGGAAGAATATGGATTGGGTGGGAAGGTTGGTTCGTCTGTGGAACTAGTTTACAGTAAGCACTTGGGTGCTCTGGAGACATGTTTTAAGAATGTTGCTGATGGTAAGTTCCGTGAGGGTGGTTTTGTGGATGATAGAGTTAAGTTTTGCAAGCGTAAGATTGAGGCACCAGTTGAATCTTTGTCGAAAGATTATGTAGAGGAAGAAAGGGGGGATGAATTTGAGAGGAGGGTGTGTGAGTGTCCGGATGGGAGGAAGTTGTGTGGTACTAATAGAGTGAAGGGTGTGAAACCTGAGTCTAATGTGGCCAATGAAGTTCAAAGTGAAGGATATGTTGATTTGGATATGCTGGACAATGGGGCGAATGAGCCTATTCCCGAAAACTTTTGTAGCCTTAATACTGAAAGGGATATACTGAATGTACCTGGTGTGGGCAAAATACTAACTGTTGATGCATCTGATGCAGAAAGCGACATGCCTATGTTGTCCGATGGAAGCAAGAGCTGTGATAATGATGACGACAACAATAGTGGTGAAGTCTTGATATTGGATCCATCCAGTGTTGACAGAAAGAGCTTTGGTCGTAAGAGGAAGAGAGAGACCAAATCAGAAATGCTAAGTTGGATTACTAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCAATGCCTGAAAAGTCTAAGTGGAAGTCTTACAGTAGTCGAGAGATGTGGAAGCAGGCTTTGTTGTTTCGAGAATCTGTCTTTCTGAAGAAAGATTTTCAGACAACCACCGAAAAACTTAGTTGGCAGGGTCAGAAAATGCATCCTTCCATGTATGAAGATCGTGTTGGTGGAGTGTACAGTCTTAGACAGAGGTTGAAATGTGACAAGAGGCTTTTATCAGGAAATTCTAAATCTGATGGAGTCTCTTCATCTATAGGAACGCATGGAGGTTCAGAGAAAACCCCAAGTCCTCGTGTTGAAAATCGTCCTGAGAAACAGTTACTTGACTCTTGTACTGCACGCTCAAGTCGAGATAAATGTGCAAGGGTGCGCGTCCCTGTGGGGCCAAAGCATCAAGCTGAAGTGCCGAAATGGACTGACATGACATATGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCTGGAAGAGGTAAATTCCAAACTACTTGTTGCTGAAAGGGACCCCATTGGAAAGGGAAGACAAGATTCATGTGGCTGCCAAGTACAAGGTTCTGTTGAGTGTGTCCGATTCCACATTGTTAAACAAAAGTCTAAAGTTAAGTTGGAATTGGGCGATGCTTTTTTCCGGTGGGATTTCCACAAGGCAGGTGAAGAAGTTAGGGGTTCATGGACTGAGCAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTTTTTAAAACCTTTCCTACAAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGTATACTCCAGATAACATTGACAGTGATGATGATGAATCAGAATTTACACCATTGAGGAAAATTTTTGGACATCAATCTCAGAAATCGCGCAGCTTCACCTTGTTATCCCCGAAAAAGGCCACAGACAAAACGGCAAAATAG 1761 0.427 MTNGEPLDLYKLFMVVKEKGGYDAVCKNRLWDLVGEEYGLGGKVGSSVELVYSKHLGALETCFKNVADGKFREGGFVDDRVKFCKRKIEAPVESLSKDYVEEERGDEFERRVCECPDGRKLCGTNRVKGVKPESNVANEVQSEGYVDLDMLDNGANEPIPENFCSLNTERDILNVPGVGKILTVDASDAESDMPMLSDGSKSCDNDDDNNSGEVLILDPSSVDRKSFGRKRKRETKSEMLSWITSIAKNPCDPAVGSMPEKSKWKSYSSREMWKQALLFRESVFLKKDFQTTTEKLSWQGQKMHPSMYEDRVGGVYSLRQRLKCDKRLLSGNSKSDGVSSSIGTHGGSEKTPSPRVENRPEKQLLDSCTARSSRDKCARVRVPVGPKHQAEVPKWTDMTYESDSKWLGTQIWPLEEVNSKLLVAERDPIGKGRQDSCGCQVQGSVECVRFHIVKQKSKVKLELGDAFFRWDFHKAGEEVRGSWTEQEEKKFKDVVKSNPASLDKCFWDHLFKTFPTKSREDLVSYYFNVFLLQRRAYQNRYTPDNIDSDDDESEFTPLRKIFGHQSQKSRSFTLLSPKKATDKTAK 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01929 586 SMART ELM2_2 382 434 IPR000949 -
Cca07g01929 586 MobiDBLite consensus disorder prediction 561 578 - -
Cca07g01929 586 Gene3D - 1 71 IPR036431 GO:0003677
Cca07g01929 586 CDD SANT 482 530 IPR001005 -
Cca07g01929 586 SUPERFAMILY ARID-like 2 70 IPR036431 GO:0003677
Cca07g01929 586 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 2 583 - -
Cca07g01929 586 SMART sant 479 532 IPR001005 -
Cca07g01929 586 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 2 583 - -
Cca07g01929 586 SMART bright_3 2 65 IPR001606 GO:0003677
Cca07g01929 586 ProSiteProfiles ARID domain profile. 1 64 IPR001606 GO:0003677
Cca07g01929 586 MobiDBLite consensus disorder prediction 329 365 - -
Cca07g01929 586 MobiDBLite consensus disorder prediction 190 217 - -
Cca07g01929 586 CDD ARID 3 60 - -
Cca07g01929 586 Pfam Myb-like DNA-binding domain 480 529 IPR001005 -
Cca07g01929 586 Pfam ARID/BRIGHT DNA binding domain 2 59 IPR001606 GO:0003677
Cca07g01929 586 MobiDBLite consensus disorder prediction 332 348 - -
Cca07g01929 586 MobiDBLite consensus disorder prediction 561 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01929 Cca-Chr7 46531383 46536208 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca07g01929 ARID 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01929 - - ccaj:109802572 1184.86