Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01928 ATGAGTAACGAGGAACCCTTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAAGGTGGTTATGATGCTGTTTGTAAGAACAGGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTGGAACTTGTTTACAGTAAGCACTTGAGTGCTGTAGAGACATGTTTGAAGAATGCTGCTGATGGTGAGTTCCCTGAGGGTGGTTTAGTGGATGATAAACTTAAGTTTTGCAAGCGTGTGATGGAGGCACCAGTTGAATCTTTGTCGGAGGCACAAATTGAATCTTTGTCGGAAGATTATGGCGAGGAAGAGGGGGCCGATGAAATCAAGAGGAGGGTGTGTGAATGTCCGGATGGGAGGAAGTTGTGTGGTACTAATAGAGTGAAGGGTGTGAAACCGGAATCAAATGGGGCCGAACATGAGAGGTTATATATGGATTTAGATGATAGGAAGTTGTGTGTTGGTAATAGAACGAAGGACAAGAATAAAGATTCTAGTGGCGATGAATCTGTTAAGGTATGTGACTATCTAGATGGGAAGAAGTCGTGTGGTACTAATAGAGTGAAGGGTGTGAATCCAGAGTCTAATGTGGCCAATGAAGTTCAGAGTGAAGGAGTTGTTGATTTGGATATGGTGGACCATGGGACGAATGAGCCTCATCTCAGAAACATGTGCAGTTTTAATACTGAAATGGATATATTGGAAGTGTCTGGTGAAGGCAAAAGAGTAACCATTGCTGCATCTGATGCAGAATGTGACATGCCTAAATTGTTTGATGGAAGCAAGAGCTGtgataatgatgatgacgacaatggtaatgatgTCTTGATATTGGATCCATCCAGTGTTGACAAAGAGAGCTTTGGTCGTAAGAGGAAGAGAGAGTTGAAGTCAGAAATGCTAAGTTGGGTTACTAGCATTGCTAAAAATCCTTGTGACCCTGCAGTTGGTTCAATGCCTGAAAAGTCTAAGTGGAAGTCTTACACTAGTCAGGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCTGTCTTTCTGAAGAAAGATTTTCAGACAATCACTGAAAAACTTAGTTGGCAGGGTCAGAAGATGCATCCTTCCATGTATGATGATCGTGTTGGGGCAGTGTACAGTCTTAGACAGAGGTTGAAATGTGACAAGAGGCATTTATCAGGAAATTCTAAATCTGACGGAGTCTCTTCAGCTTCATCTGGAGGTTCAGAGAAAACACCGAGTCCTCATGTTGAAGATTGTCCTGAGAAACATTTACTTGACTCTTGTACTGCACGCTCAAGTCGTGATAAATGTGTCAGGGTGCACATCCCTGTGGGCCCAAACCATCAAGCCAAAGTGCCGAAATGGACTGACATGTCATATGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCTGGAAAAGGTAAATTCCAAACTTCTTCTAGTTGAAAGGGACCCCATCGGAAAGGGAAGACAAGATTCATGTGGCTGCCAAGTACAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTGCTAAGAAAAGGTCTAAAGTTAAGTTGGAATTGGGCGAGGCTTTTTACCTGTGGAATTTGCACAAGGTGGGTGAAGAAGTTAGGGGTTCATGGACTGAGCAAGAAGAGAAGAAGTTCATCGATGTGGTGAAATCAAATCCTGCTTCACTTGATAAGTGTTTTTGGGATCATCTTTTTAAAACATTTCCTATGAAGAGTAGAGAAGATTTGGTCAGCTATTATTTCAACGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACTCCAGACAACATTGACAGTGATGATGATGAATCAGAATTTACACCTTTGAGGAAAGTTTTTGGACATCAAACTCAGAAATCGCGCAGCTTCACCTTGTTGTCCCCAAAAAAGGCCACAGACAAAAAGGCATAA 1956 0.4218 MSNEEPLDLYKLFMVVKEKGGYDAVCKNRLWDLVGEEYGLGVKVGSSVELVYSKHLSAVETCLKNAADGEFPEGGLVDDKLKFCKRVMEAPVESLSEAQIESLSEDYGEEEGADEIKRRVCECPDGRKLCGTNRVKGVKPESNGAEHERLYMDLDDRKLCVGNRTKDKNKDSSGDESVKVCDYLDGKKSCGTNRVKGVNPESNVANEVQSEGVVDLDMVDHGTNEPHLRNMCSFNTEMDILEVSGEGKRVTIAASDAECDMPKLFDGSKSCDNDDDDNGNDVLILDPSSVDKESFGRKRKRELKSEMLSWVTSIAKNPCDPAVGSMPEKSKWKSYTSQEIWKQALLFREAVFLKKDFQTITEKLSWQGQKMHPSMYDDRVGAVYSLRQRLKCDKRHLSGNSKSDGVSSASSGGSEKTPSPHVEDCPEKHLLDSCTARSSRDKCVRVHIPVGPNHQAKVPKWTDMSYESDSKWLGTQIWPLEKVNSKLLLVERDPIGKGRQDSCGCQVQGSVECVRFHIAKKRSKVKLELGEAFYLWNLHKVGEEVRGSWTEQEEKKFIDVVKSNPASLDKCFWDHLFKTFPMKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTQKSRSFTLLSPKKATDKKA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01928 651 ProSiteProfiles ARID domain profile. 1 64 IPR001606 GO:0003677
Cca07g01928 651 CDD SANT 548 596 IPR001005 -
Cca07g01928 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 2 649 - -
Cca07g01928 651 Pfam ARID/BRIGHT DNA binding domain 3 58 IPR001606 GO:0003677
Cca07g01928 651 MobiDBLite consensus disorder prediction 401 417 - -
Cca07g01928 651 Pfam Myb-like DNA-binding domain 546 595 IPR001005 -
Cca07g01928 651 SMART ELM2_2 448 500 IPR000949 -
Cca07g01928 651 MobiDBLite consensus disorder prediction 627 642 - -
Cca07g01928 651 ProSiteProfiles ELM2 domain profile. 446 570 IPR000949 -
Cca07g01928 651 MobiDBLite consensus disorder prediction 627 651 - -
Cca07g01928 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 2 649 - -
Cca07g01928 651 MobiDBLite consensus disorder prediction 396 425 - -
Cca07g01928 651 CDD ARID 6 60 - -
Cca07g01928 651 Gene3D - 1 70 IPR036431 GO:0003677
Cca07g01928 651 SUPERFAMILY ARID-like 3 70 IPR036431 GO:0003677
Cca07g01928 651 SMART bright_3 2 65 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01928 Cca-Chr7 46499863 46504477 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca07g01928 ARID 7.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01928 - - gmx:100780550 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01928 07 46499863 46504477 Cca01g02282 01 51212770 51213449 PCT