Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01923 ATGGGTTATCTGAGCAAAGCTTCCAAAACTCTGAGGCAATCGAATTACCTATCGTTGTTGCGCAATTTCAGTTTCAACCCAATAACCAACAGAATAACCAATGATCGCTTTTCTTTCACCCGAGCACTGTTCTGTTCCCAGTCACGCCAAAACAGCACCACTAGAGAGAAAAGCATCATCGATTTGAGCCATTACCCTCCAGAACTCGTTAGAAACTTCTCAATCATTGCACACGTGGATCATGGCAAGTCCACCCTTGCTGACCGCCTTCTAGAACTCACTGGAACCATTAAGAAAGGCCATGGCCAACCCCAGTATCTTGATAAACTGCAGGTGGAGAGAGAAAGAGGAATCACAGTTAAAGCCCAGACAGCAACAATGTTCTATAAGCACAGCGTAAACGGTGATGATTGCAGTGATGGAAAGGAGTCACCTAATTTTTTGCTGAATCTCATTGACACTCCTGGACATGTTGATTTTAATTATGAAGTGTCAAGGTCAGTGGCAGCTTGTCAGGGTGTGCTTTTGGTTGTTGATGCTGCTCAGGGAGTTCAAGCACAAACTGTTGCTAACTTTTACCTTGCCTTTGAGTCTAACCTGACAATTGTGCCTGTTATAAACAAGATTGATCAGCCTACTGCTGATCCGGATCGTGTTAAAGCCCAATTGAAATCGATGTTTGATCTCAACCCAAGTGATGCATTGCTAACATCTGCTAAAACTGGAGAGGGTCTTGAGCAAATCCTTCCGGCAGTCATAGAGCGCATACCTGCCCCTCCTGGGAGGAGTGATTCTCCTCTACGCATGCTTTTACTTGATTCTTATTATGATGAATACAGAGGGGTAATATGCCATGTTGCTGTTGTTGATGGTGTCCTGCGCAAGGGGGATAAGATTTCTGCTGCAGCTACTGGTCAGTCATATGAAGCTTTAGATATAGGCATCATGCATCCTGAACTTACACCTACTGGAATCTTGCTTACTGGACAAGTTGGTTATGTTGTAAGTGGCATGCGGTCAACCAAAGAGGCCCGTGTTGGTGATACAATTTACCATACTCGAAGTGTTGTAGAGCCTCTTCCAGGTTTCAAGCCAGCAAAACATATGGTGTTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCTCTAAATCATGCAATAGAGAGGTTGACATGCAACGATGCCAGTGTCTCTATTACTAAAGAAACTAGCACTGCTCTAGGTCTGGGGTTCAGGTGTGGGTTTTTAGGCCTTCTGCACATGGATGTTTTTCATCAACGGCTTGAACAGGAGTATGGAGCTCACATTATCTCAACTGTTCCTACTGTGCCTTATATATTTGAGTTTTCTGATGGAAGCAAGTTAGAAGTTCAGAATCCTGCGACATTACCCTCTAATCCCAAGCAACGAGTGACAGCCTGTTGGGAACCTACAGTAATAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCTGTTATTACCCTTGTCTCTGAGCGTAGGGGTCATCAGTTGGAGTACTCCTTTATTGACAGTCAACGGGTATTCATGAAGTACCGCCTGCCTTTGAGAGAAATTGTTGTTGACTTTTATAATGAATTAAAGAGTATAACATCAGGCTATGCATCGTTTGATTATGAGGACTCCGATTATCAACAAGCTGATCTGGTGAAACTTGATATTCTCTTGAATGGTCAACCAGTTGATGCAATGGCAACCATTGTTCATAACACAAAAGCATATCGTGTTGGGCGTGATTTGGCGGAGAAATTGAAGAACGTCATCGACAGGCAAATGTTTGAGATATCCATACAAGCTGCCATTGGGTCAAAAATCATAGCAAGGGAGACGATTTCTGCTATGAGGAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTACTCGTAAAAGGAAGCTATTGGAGAAGCAAAAGGAAGGAAAGAAGAGAATGAAGCGGGTTGGTTCTGTTGATATACCACAAGAAGCATTTCACCAACTATTGAAGGTTTCTTAG 2022 0.4308 MGYLSKASKTLRQSNYLSLLRNFSFNPITNRITNDRFSFTRALFCSQSRQNSTTREKSIIDLSHYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHSVNGDDCSDGKESPNFLLNLIDTPGHVDFNYEVSRSVAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVKAQLKSMFDLNPSDALLTSAKTGEGLEQILPAVIERIPAPPGRSDSPLRMLLLDSYYDEYRGVICHVAVVDGVLRKGDKISAAATGQSYEALDIGIMHPELTPTGILLTGQVGYVVSGMRSTKEARVGDTIYHTRSVVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIFEFSDGSKLEVQNPATLPSNPKQRVTACWEPTVIATIIIPSEYVGPVITLVSERRGHQLEYSFIDSQRVFMKYRLPLREIVVDFYNELKSITSGYASFDYEDSDYQQADLVKLDILLNGQPVDAMATIVHNTKAYRVGRDLAEKLKNVIDRQMFEISIQAAIGSKIIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLKVS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01923 673 CDD EF4_III 368 443 - -
Cca07g01923 673 CDD LepA 71 259 - -
Cca07g01923 673 TIGRFAM small_GTP: small GTP-binding protein domain 74 248 IPR005225 GO:0005525
Cca07g01923 673 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 68 260 IPR000795 GO:0003924|GO:0005525
Cca07g01923 673 Pfam Elongation factor Tu GTP binding domain 70 257 IPR000795 GO:0003924|GO:0005525
Cca07g01923 673 SUPERFAMILY Translation proteins 258 356 IPR009000 -
Cca07g01923 673 Hamap Elongation factor 4 [lepA]. 66 673 IPR006297 GO:0005525
Cca07g01923 673 CDD EF4_II 267 352 - -
Cca07g01923 673 Gene3D Translation factors 263 360 - -
Cca07g01923 673 CDD lepA_C 478 557 IPR035654 -
Cca07g01923 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 281 IPR027417 -
Cca07g01923 673 TIGRFAM lepA: elongation factor 4 70 672 IPR006297 GO:0005525
Cca07g01923 673 Gene3D - 557 631 IPR038363 -
Cca07g01923 673 Gene3D Elongation Factor G (Translational Gtpase), domain 3 361 442 - -
Cca07g01923 673 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 56 671 - -
Cca07g01923 673 Gene3D - 68 261 IPR027417 -
Cca07g01923 673 Gene3D - 443 556 - -
Cca07g01923 673 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 108 123 IPR031157 -
Cca07g01923 673 Pfam GTP-binding protein LepA C-terminus 565 671 IPR013842 -
Cca07g01923 673 PRINTS GTP-binding elongation factor signature 72 85 IPR000795 GO:0003924|GO:0005525
Cca07g01923 673 PRINTS GTP-binding elongation factor signature 115 123 IPR000795 GO:0003924|GO:0005525
Cca07g01923 673 PRINTS GTP-binding elongation factor signature 150 160 IPR000795 GO:0003924|GO:0005525
Cca07g01923 673 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Cca07g01923 673 SUPERFAMILY EF-G C-terminal domain-like 477 571 IPR035647 -
Cca07g01923 673 SUPERFAMILY EF-G C-terminal domain-like 369 446 IPR035647 -
Cca07g01923 673 PANTHER TRANSLATION FACTOR GUF1-RELATED 56 671 IPR006297 GO:0005525
Cca07g01923 673 Pfam Elongation factor G C-terminus 478 563 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01923 Cca-Chr7 46374052 46380763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01923 57 211 Eukaryotic Initiation Factors Gene Family AT1G56070 38.217 1.11e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01923 K21594 - gmx:100781092 1252.65