Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01915 ATGGCTGTGGTGAGTCCTGTGCCTACAACTACACAAAGGATGGGTTCTGAGAGGTCTTTTTCTGTTGATGTTGGGGGAGAAAATTTGGAGGAACCTAATCCAAGTGTGGTTGATCAGCCAATCTATGTTGCCGTGTCAAAAGAATTGAAGGAGAGCAAATCAAATCTGGTATGGGCAATACAACACTCCGGAGGAAAGAGGATTTGCATTCTTTATGTTCACGTTCCTGCTACAATGATCCCCCTATTGGGAGGTAGATTCCCAGTCAGTGCTCTAAAAGAGGAGCAGGTTCAGTCATACTGGGAAGAGGAAAGGCAACGCATGCATAGGACTCTGGACGAATATCTACGTATCTGTCTACGGATGGGGGTGCGAGCAGAGAAACTGCATATTGAAATGGATAGCATTGAAAGAGGAATTTTAGAACTTGTGTCCCAGCATGACATCCGAAAGCTTGTTATGGGGGCAGCAGCTGATAAGTTCTATAATAGGAGAATGATGGACATCAAATCTAAGAAAGCCATCTATGTGTATAAACAAGCTCCAGCTTCTTGTCAAATACAGTTTGTCTGCAAAGGGCACCTCATACACCAAAGGGATCGCAGTTTGGATGAAGGTAATTCAGAGTTAGCGTCTCCTTTGGGGCAGCAAGTGCCAAATTCCGTGAGATCTTTAAGATCTCAATCTACTCTGGGGCAAGATCGTCGATCAAATCTAACAAATCCTGCCCTAGATTTATTACGCAGAGTAAGGTCTGCCAATGATAGACATGGGGCGGGCTTTTTGCCTGCTTCTTCTCCAGAAGAGACTGAAGGGTTTTCAACTCCACGTGACAGGATGGGTACAGAAGTAAGTTCAGATGAATCCGATAGGTTGTCAAGGATGAGTCCTTCTGCCTTATCAACATGCTCTGACAGTGCAGTTGAACTAGCATTGACCCCAAGTTTGATTACTGAAGGCAGTGAGCATGCATTGGAGTTGACTTTGAGTCGCCTACTGACAGAGGATCTTCATCATTCAGCTCCTCCTAGTATACTGGATGGTGGGACGAATGATACTATGTATGACCAGCTTGAACAGGCTATGGCTGAGGCTGAGAATGCTAGGCAAAATGCGTATCAAGAAACGTTTAGGCGTATGAAAGCTGAAAGAGATGCCATTGACTCTATACGCAAGGCTAAAGCCTCTGAAAGCTTATATACGGAGGAGTTGAACATGAGGAGAATGGCAGAGGAAGAACTTAGAAAAGAAAAAGAAGAACTTGAGAATATGAAGAGCCTGAGAGACAAGGTTAAGGAAGAACTCCGCCTTGCCCTTGATCAGAAAGCATCCCTGGAGAATCAAATTGCATCATCTGAACTTATGATAAAGGAGTTGGAACAGAAGATTTTATCTGCTGTGGATCTATTACAAAGATACAAGAATGAACGAGATGAATTGCAGATGCAGCGCGATAATGCATTGAGAGAGGCTGAAGAGTTGAGGAAGAAACAAGGAGAGGCCTCATGCACCCACGTCCCTCAATTGTTCTCAGAATTCTCTTTTTCAGAAATTAAAGATGCAACAGGTAATTTCAATCCATCCACGAAGATCGGAGAAGGTGGATACGGAAGTATATTTAAAGGTATCTTGCGTCACACTGAGGTGGCTATAAAAATGTTGCACTCTAACAGCATGCAAGGGCCCTTGGAGTTTCAACAGGAGGTTGATGTATTGAGCAAGCTAAGGCATCCAAATCTTATCACACTCATAGGAGCCTGCCCAGAATCATGGACTCTTGTCTACGAGTATTTACCCAACGGAAGCCTTGAAGACCGACTTGTCTGCAAGGATAACACCCCTCCATTATCATGGCAAACTCGAATTCGCATTGCTGCTGAACTATGTTCTGCTCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTGAAACCCTCCAACATTCTCCTTGATGCAAACCTTATTAGCAAGCTTAGTGACTTTGGAATATGTCGTATATTATCCAACTGTGAGGGTTCTAGTAACAATACTACAGAGTTTTGGAGAACCGACCCGAAGGGAACTTTTGTCTACATGGATCCTGAATTCCTTGCCTCAGGGGAACTGACTCCAAAGTCTGATGTATATTCATTCGGAATCATATTGTTGAGATTGTTGACTGGGAAACCAGCCTTGGGAATAACAAAGGAAGTGAAATATGCATTAGATACTGGAAAGTTGATGTCCCTATTGGACCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGGCTCGCTTGGCTTTGAGGTGTTGTGATATGAGTCGAAAGAGCCGGCCGGATCTTTATTCAGATGTCTGGAGAATACTTGATGCAATGAGGGCTTCTTCTGGAGGCACAAACGCCTTTGGACTAAGTTCTGAAGGGCTTTCACAACCTCCTTCATATTTTCTTTGTCCAATCTTCCAGGAAGTCATGAGAGATCCACATGTAGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGAGGATGGCTTGATGGTGGTCATGACAATTCACCAATGACAAATAGTAAGCTTGCACATCACAATCTTGTTCCTAATCGTGCTCTTCGCTCTGCGATCCAGGACTGGAATCAAAATCACTGA 2652 0.44 MAVVSPVPTTTQRMGSERSFSVDVGGENLEEPNPSVVDQPIYVAVSKELKESKSNLVWAIQHSGGKRICILYVHVPATMIPLLGGRFPVSALKEEQVQSYWEEERQRMHRTLDEYLRICLRMGVRAEKLHIEMDSIERGILELVSQHDIRKLVMGAAADKFYNRRMMDIKSKKAIYVYKQAPASCQIQFVCKGHLIHQRDRSLDEGNSELASPLGQQVPNSVRSLRSQSTLGQDRRSNLTNPALDLLRRVRSANDRHGAGFLPASSPEETEGFSTPRDRMGTEVSSDESDRLSRMSPSALSTCSDSAVELALTPSLITEGSEHALELTLSRLLTEDLHHSAPPSILDGGTNDTMYDQLEQAMAEAENARQNAYQETFRRMKAERDAIDSIRKAKASESLYTEELNMRRMAEEELRKEKEELENMKSLRDKVKEELRLALDQKASLENQIASSELMIKELEQKILSAVDLLQRYKNERDELQMQRDNALREAEELRKKQGEASCTHVPQLFSEFSFSEIKDATGNFNPSTKIGEGGYGSIFKGILRHTEVAIKMLHSNSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLVCKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSNCEGSSNNTTEFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGKPALGITKEVKYALDTGKLMSLLDPLAGDWPFVQAEQLARLALRCCDMSRKSRPDLYSDVWRILDAMRASSGGTNAFGLSSEGLSQPPSYFLCPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGHDNSPMTNSKLAHHNLVPNRALRSAIQDWNQNH 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01915 883 Coils Coil 400 497 - -
Cca07g01915 883 SMART serkin_6 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01915 883 MobiDBLite consensus disorder prediction 209 240 - -
Cca07g01915 883 ProSiteProfiles Protein kinase domain profile. 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01915 883 Pfam Protein kinase domain 527 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01915 883 ProSitePatterns Protein kinases ATP-binding region signature. 531 552 IPR017441 GO:0005524
Cca07g01915 883 Pfam U-box domain 814 883 IPR003613 GO:0004842|GO:0016567
Cca07g01915 883 SUPERFAMILY RING/U-box 807 882 - -
Cca07g01915 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Cca07g01915 883 ProSiteProfiles U-box domain profile. 812 883 IPR003613 GO:0004842|GO:0016567
Cca07g01915 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 883 IPR013083 -
Cca07g01915 883 Gene3D Phosphorylase Kinase; domain 1 495 597 - -
Cca07g01915 883 Gene3D Transferase(Phosphotransferase) domain 1 598 802 - -
Cca07g01915 883 MobiDBLite consensus disorder prediction 272 290 - -
Cca07g01915 883 SMART Ubox_2 816 879 IPR003613 GO:0004842|GO:0016567
Cca07g01915 883 PANTHER U-BOX KINASE FAMILY PROTEIN 33 882 - -
Cca07g01915 883 CDD RING-Ubox_WDSUB1_like 817 858 - -
Cca07g01915 883 Coils Coil 351 375 - -
Cca07g01915 883 MobiDBLite consensus disorder prediction 202 242 - -
Cca07g01915 883 SUPERFAMILY Protein kinase-like (PK-like) 504 783 IPR011009 -
Cca07g01915 883 PANTHER OS02G0152300 PROTEIN 33 882 - -
Cca07g01915 883 MobiDBLite consensus disorder prediction 257 300 - -
Cca07g01915 883 CDD STK_N 40 193 - -
Cca07g01915 883 Gene3D HUPs 39 183 IPR014729 -
Cca07g01915 883 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 54 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01915 Cca-Chr7 46258092 46264857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01915 396 879 U-box Gene Family AT4G25160 40.200 9.98e-114 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca07g01915 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01915 - - gmx:100807515 1532.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01915 07 46258092 46264857 Cca07g01915 07 46258092 46264857 ECH
Cca01g02274 01 51073371 51080942 Cca07g01915 07 46258092 46264857 ECH