Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01898 ATGGATCGTGGGGACCAAATGGCGCTATCTGGGTCTTACTACATGCAGCAAAGAGGAATACCTGGATCTGGAGCACAACCCGAGTTACATGTTTCACCTAATATTCGTCCACTGTCTAATCCGAATCTACCATTTCAATCCAGCATTGGTGGTGGTAACATTGGATCCACATTGCCATTGGAATCTTCGGCAATTTCGTCTCATGGTATCAATGTTGGAGCTCCTACTGGGGCTCCTCCTGGGGAACCTGTCAAGAGGAAGAGAGGAAGGCCTAGGAAGTATGGCACTGATGGAAGTGTGTCCTTGGCATTGACTCCAACTCCAACATCATCTAGTCATCATGGAGCCTTTTCACAAAACCAGAAACGGGGCAGGGGGCGCCCACCTGGGACTGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAGTTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCCAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCAACTGTTACACTTCGTCAGCCATCAACTTCAGGCGGCACTGTAACATATGAGGGGCGCTTTGAGATAGTGTGCCTGTCAGGCTCTTACTTGGTCACTGATAGTGGCGGCTCACGCAATCGAACTGGTGGACTAAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGTGGTGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGCTTTGTATGGGGAGGATCAAAGACAAAGAACAAGAAAAAGGAAGGATCAGAAGGTGCAGAAGTTGCTGTGGAGTCAGATCACCAGGCAGTAGTTCATAATCCAGTGGCACTGAACAGCATCTCACCAAATCAAAATCTTACTCCATCCCCATCTTTGAGTCCTTGGTCGGCATCGCGACCGTTGGATATGCGTAATTCCCATGTTGACATTGATTTGATGCGTGGTTGA 1026 0.4844 MDRGDQMALSGSYYMQQRGIPGSGAQPELHVSPNIRPLSNPNLPFQSSIGGGNIGSTLPLESSAISSHGINVGAPTGAPPGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSHHGAFSQNQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFVWGGSKTKNKKKEGSEGAEVAVESDHQAVVHNPVALNSISPNQNLTPSPSLSPWSASRPLDMRNSHVDIDLMRG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01898 341 CDD DUF296 153 267 IPR005175 -
Cca07g01898 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Cca07g01898 341 Gene3D - 154 294 - -
Cca07g01898 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 270 - -
Cca07g01898 341 MobiDBLite consensus disorder prediction 100 119 - -
Cca07g01898 341 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Cca07g01898 341 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Cca07g01898 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 311 IPR039605 GO:0003680
Cca07g01898 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 311 - -
Cca07g01898 341 MobiDBLite consensus disorder prediction 1 39 - -
Cca07g01898 341 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Cca07g01898 341 MobiDBLite consensus disorder prediction 67 137 - -
Cca07g01898 341 MobiDBLite consensus disorder prediction 304 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01898 Cca-Chr7 45972870 45980525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01898 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.451 6.27e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01898 - - gmx:100814615 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01898 07 45972870 45980525 Cca07g01898 07 45972870 45980525 ECH
Cca07g01898 07 45972870 45980525 Cca01g02251 01 50734205 50742524 PCT