LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g01894	ATGAACAATAGAGAGAACAATAGAGAGAGATACCCACCTGGGATGGGGTTAGGTCGAGGTTTGAacccgaaccatgggtttcaaccgaggggacatcaccatcagtatgtgcagaggcacatggtgcagcatcatccgcagcagtatcaacagaatcatcatcaacaacatcatcatcagcaacatcatcaacagcatcatcatcaacaacaacagcatcatcatcatcagcagcagcaacagcaacagtggttgagaaggaaccaattaggtggtgggaccgacacaaacgttgttgaggaggttgagAAGACTGTACAGTCTGAAGCCGTTGACCCAAGTTCGCAAGATTGGAAGGCAAGATTAAAGATTCCACCACCTGATACACGCTATAAGACAGAGGATGTGACGGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGCGAGCTGCTTATGGGAATATATGAGAAAGGTTTTGAAAGACCATCTCCTATCCAAGAAGAGAGCATTCCGATTGCTCTTACTGGAAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCGTTTTGTATTCCAGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTAATATTGGTCCCAACACGAGAACTGGCTTTGCAAACATCTCAAGTTTGTAAAGAGCTTGGAAAACATTTGCAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGCTTATATCAACCAGTTCATCTACTAGTTGGAACTCCAGGAAGGATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTGGAAACCGTCAAATTCTGATGTTTTCTGCTACATTTCCTGTTACTGTTAAGGACTTCAGAGACAGATATCTTCGTAAGCCATATGTCATTAACCTTATGGATGAGCTAACTCTTAAAGGTATTACACAATATTACGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATTAACCAGTCAATCATCTTCTGCAATTCCGTGAATCGGGTTGAACTTCTCGCCAAGAAAATCACAGAACTTGGGTATTCATGCTTCTATATCCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAACGGTGCCTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTCAACGTTGTTATTAATTTTGATTTTCCAAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGCAGGTTTGGGCACCTAGGTTTAGCAGTGAACTTGATTACCTATGAGGATCGCTTCAATTTATACAGGATTGAACAAGAGCTTGGCACTGAAATAAAGCAAATTCCACCTCACATTGATCAGGCAATATATTGCCGGTGA	1551	0.3398	MNNRENNRERYPPGMGLGRGLNPNHGFQPRGHHHQYVQRHMVQHHPQQYQQNHHQQHHHQQHHQQHHHQQQQHHHHQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGNRQILMFSATFPVTVKDFRDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g01894	516	CDD	SF2_C_DEAD	354	483	-	-
	Cca07g01894	516	MobiDBLite	consensus disorder prediction	51	74	-	-
	Cca07g01894	516	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	142	170	IPR014014	GO:0003724
	Cca07g01894	516	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	173	343	IPR014001	-
	Cca07g01894	516	SMART	helicmild6	393	474	IPR001650	-
	Cca07g01894	516	MobiDBLite	consensus disorder prediction	1	84	-	-
	Cca07g01894	516	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 6	7	516	-	-
	Cca07g01894	516	Pfam	Helicase conserved C-terminal domain	368	474	IPR001650	-
	Cca07g01894	516	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	212	496	IPR027417	-
	Cca07g01894	516	MobiDBLite	consensus disorder prediction	105	132	-	-
	Cca07g01894	516	Pfam	DEAD/DEAH box helicase	167	331	IPR011545	GO:0003676\|GO:0005524
	Cca07g01894	516	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	353	513	IPR001650	-
	Cca07g01894	516	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	7	516	-	-
	Cca07g01894	516	CDD	DEADc_DDX6	144	344	-	-
	Cca07g01894	516	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	289	297	IPR000629	-
	Cca07g01894	516	Gene3D	-	347	516	IPR027417	-
	Cca07g01894	516	SMART	ultradead3	161	357	IPR014001	-
	Cca07g01894	516	Gene3D	-	100	346	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g01894	Cca-Chr7	45927464	45934817	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g01894	142	513	Eukaryotic Initiation Factors Gene Family	AT3G19760	37.968	4.80e-93	288

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g01894	K12614		-	tcc:18614173	872.848