Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01892 ATGGGAAGAACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACAGCTGAAGAGGATGAAATTCTTGCTAGTTTTATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCCAGGATGGCAGGTCTTCTTCGCTGTGGCAAGAGTTGCAGACTTAGGTGGACAAACTATCTCAGGCCTGACATCAAGCGTGGTCCCTTTACTCTTGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCCTCTCAGTTGCCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGGCTTGACCCCAAAACCCACGAGCCATTAGCCTCATCATCTTACCCTTTCCACAAGGCACCTGCATCAGTATCCACGCGCCACATGGCTCAGTGGGAGAGTGCTAGGCTCGAAGCCGAGGCCAGGCTCTCGAACGAGTCCTCAAGGTTAACCAATCATAGTTCCCTTGCGGATATTAACAAAACCACTGACTCTGACTACTTCCTCCGCATTTGGAACTCTGAAGTTGGAGAAGCATTTCGCAATGTTCGCCACAAAGGTGAAAACAAAGTCACTAGCTCCTGCCACAGTCCTCTCTCTGCAGGATCATCTTCCAACAAGTGTGAGTCTGTTGCAACAAATGCAGAGTTGGCTTCTAATGCACAAGACACACCTGAAAACACTATGAAGGAAGAGTTGGAGTGGAGGACTCGAGGATCCGACTCGTCGAGCTCTAATGACATGGAAGATTCATCAGACACTGCCTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTGGAAGAAAACTCTTTTGTTTGTCCACTTTAG 903 0.4684 MGRTPCCDKKGLKKGPWTAEEDEILASFIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPKTHEPLASSSYPFHKAPASVSTRHMAQWESARLEAEARLSNESSRLTNHSSLADINKTTDSDYFLRIWNSEVGEAFRNVRHKGENKVTSSCHSPLSAGSSSNKCESVATNAELASNAQDTPENTMKEELEWRTRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEENSFVCPL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01892 300 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Cca07g01892 300 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca07g01892 300 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca07g01892 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 294 - -
Cca07g01892 300 CDD SANT 16 62 IPR001005 -
Cca07g01892 300 Gene3D - 11 68 - -
Cca07g01892 300 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca07g01892 300 MobiDBLite consensus disorder prediction 212 246 - -
Cca07g01892 300 MobiDBLite consensus disorder prediction 207 272 - -
Cca07g01892 300 PANTHER PROTEIN ODORANT1-LIKE 1 294 - -
Cca07g01892 300 CDD SANT 70 113 IPR001005 -
Cca07g01892 300 Gene3D - 69 134 - -
Cca07g01892 300 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca07g01892 300 SMART sant 13 64 IPR001005 -
Cca07g01892 300 SMART sant 67 115 IPR001005 -
Cca07g01892 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Cca07g01892 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01892 Cca-Chr7 45907637 45910266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01892 1 294 MYB Transcription Factor Family AT3G61250 66.443 2.45e-126 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g01892 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01892 K09422 - gmx:100800408 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01892 07 45907637 45910266 Cca01g02236 01 50555609 50558893 PCT