Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01890 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTATACCTTACCACAAGAACTGCTTCAGATGCAGTCACTGCAAGGGATACCTCACTATGGGCACCTACTCTTCAATGGATGGTATCCTCTATTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAAAACTTTCAGCAAGTAAAGTCTGCTGATAAACAAAATGAGATGAATAAGGCCCCCAGCAGACTCTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTCTGTTCAAAAACTGTCTATCCTCTGGAAAAGATGTCACTGGAAGGGGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTGCACTGGATGGTGTCCTCTACTGCAGGCACCACTTCCAACAGCTCTTCATGGAGAAAGGGAACTACCACCATGTGCTCCAAGCTGCTGCAAACAAGAAGAATGTCACACCACCTCCTGAGCCAGCTGAGCCAGCTGAACCagcagaagaagaagagccaccaaaggcagaagaaggagaagaagaaACCAAGGAACACAACGAAGAGACTAAGGAAGCAATGGAAACTTGA 669 0.42 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFRCSHCKGYLTMGTYSSMDGILYCKPHFEQLFKESGNFSKNFQQVKSADKQNEMNKAPSRLSSMFSGTLDKCSVCSKTVYPLEKMSLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANKKNVTPPPEPAEPAEPAEEEEPPKAEEGEEETKEHNEETKEAMET 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01890 222 Coils Coil 202 222 - -
Cca07g01890 222 MobiDBLite consensus disorder prediction 190 204 - -
Cca07g01890 222 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 208 - -
Cca07g01890 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Cca07g01890 222 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Cca07g01890 222 Pfam LIM domain 10 65 IPR001781 -
Cca07g01890 222 Pfam LIM domain 106 161 IPR001781 -
Cca07g01890 222 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cca07g01890 222 Gene3D Cysteine Rich Protein 101 168 - -
Cca07g01890 222 Gene3D Cysteine Rich Protein 5 72 - -
Cca07g01890 222 MobiDBLite consensus disorder prediction 177 222 - -
Cca07g01890 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Cca07g01890 222 MobiDBLite consensus disorder prediction 205 222 - -
Cca07g01890 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Cca07g01890 222 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Cca07g01890 222 PANTHER OS06G0237300 PROTEIN 1 208 IPR045268 GO:0051015
Cca07g01890 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Cca07g01890 222 SMART lim_4 105 157 IPR001781 -
Cca07g01890 222 SMART lim_4 9 61 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01890 Cca-Chr7 45890356 45892857 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Cca07g01890 LIM 1.4e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01890 - - gmx:100779513 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01890 07 45890356 45892857 Cca07g01890 07 45890356 45892857 ECH
Cca07g01890 07 45890356 45892857 Cca01g02229 01 50490255 50492422 PCT