Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01887 ATGGATATGGCTTGTGGCTTGCCGCAGTCAAGGATTTTGCACGGAGGTGTGGGGACGAGTTACAGGCACAGATCAGTTGGTCAGTTTGGTTGTTTTAATTTTAGAGGGAGAGGTTTTGGTTGTGCGGTTTTCGGCAACTCAGTTTCGAGATTGCGTGGTAGTGGGATGAGTGTTTCTGCATGTTGGAATAATTCTAGAGTGGTTACTGATAGGGAGTTTAATGTTTTGAATGTGAAGAGAAGTTTGTCTTGTAAGAATAATGGTCTTCTTATGGGGTCGAGAGTAATTTGGTCCAAGTGCCAGGGTAATGATTCTTTAGCTTATGTTAATGGCAACGGTCGGAATGTTGACTATGTGGAAGGTTCAGGTGAGGATGCAGGATTGGGGCCTGTTTCTAGTGCTGAACTGGATGCACCTTTGGAAGAAGAAGGGAGGAAAGAAGGAGGGGGTGAAATAGGAGTAGAGGAACAAAGCGTGGATGAACTGAAAGAACTATTGCAAAAGGCCTTGAGGGAGCTGGAAGTAGCTCAAATAAATAGTACCATGTTTGAGGAAAAAGTTAAAAAAATATCAGAGACTGCTATTTTCTTGCATGATGAAGCAGTAAATTCTTGGAACGATGTTAATTCTAACCTTGACACCATCCAAGAATTATCAAATGAAGAACTCACGGCCAAAGAAGCTGTCCAAAATGCAACAATGGCTCTTTCATTAGCTGAGGCAAAGCTTCAAGTAGCCATAGAATCTTTGGAGGCTGCAAATGAAGTTCCTGATTCAGCACTAGGTTCTAATGAGAGCAATGGTGATAAGGACACAGTGGAAGAGGAGAAAGCTATTTTGGATGCTCAAGAAGATATCAAGGAATGCCAGGCTACATTAGCCAATTGTGAGGCAGAGCTGAAGCACTTGCAAAATAGAAAGGAGGAGTTGCAGAAGGAATTGAGCAAATTGCAAGAAATTGCTGAAAAGGCTCAGCTTAATGCGGTGAAAGCTGAAGAGGATGTTACAAACATAATGCTTTTGGCAGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACAAAACGTGTAAATGATGCTGAGATTGCCTTACAGCGAGCAGATAAGTCTAATTCTAATTTAAATGCTGATGCCATAGAAACTACACAAGCACAGGATGTTGCGGTTGTTCCTGAAGAGGAGAAAGTGGTTCAAGGTTTTTCTGGTGATGTCACTGTTGAAAGAGACACAGATTTGGCAATTGATGATGAATCTTTGCTTTCCAAGATATCACCTGAAACACTATCTGATAAAACCAGCCAAATTTTGGAAGACAAACCACAGTCTGATTATTTAAGTGATAATGAGAATTCTGTGCAAACAAAAAAGCAGGAAACGCCGAAAGATTTGGCCAGAGATAATTCATCCTTTGCTCCGAAGTCATTATTGAAAAAGTCTTCTCGATTTTTTCCTGCATCATTCTTCTCTTTTCCTGAGGATGAGACTGAACCAGCATCGGTTTTCCAGGGCCTTGTATTATATATACAGAAGCAGTTTCCCAAGATGATATTTGGGTTATTGCTAATGGGAGCAGGGGTTGCCTTCTATGCTAATAGAGTGGAGAGGAATGCTCAGCTGCTTCCACAGGCAGATGTTATTATGACCAGTGTTGAAGAAGTTTCCTCTAGTGCAAAGCCTCTGGTTAGACGACTTCAGAAACTCCCCAAGAAAATCAAGAAAATCATTGCATCATTACCGCATCAAGAGGTGAATGAGGAAGAAGCCTCCCTCTTTGACATGCTTTGGTTATTACTTGCAAGTGTCATATTCGTGCCAATATTTCAGAAAATCCCTGGAGGCAGTCCTGTTCTTGGCTACTTGGCTGCTGGCATCCTGATTGGGCCTTATGGTCTCTCTATCATTCGTCATGTCCATGGGACAAAAGCAGTAGCTGAATTTGGAGTTGTTTTCCTTCTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGACTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCACAGGTTTTGGCAACTGCTGTAGCTGTCGGCTTGGTGGCTCATTATATTTGTGGCCAAGCTGGTCCTGCTGCTATTGTCATTGGGAATGGCCTAGCGTTATCATCAACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGTCATGGACGAGCTACTTTTTCTGTGCTACTTTTTCAGGATCTGGCTGTGGTGGTCTTGCTAATACTCATACCTCTTATTTCTCCTAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCAGGGGGGCGATTGCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATTTTTTCAGCCAACACACTCCTTGTTATACTTGGCACGAGTCTTCTTACAGCCAGGGCAGGACTTTCCATGGCATTGGGTGCATTTTTGGCAGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGCCTCTTCTTTATGACGGTTGGGATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTCCGGTCGTCGCAGGTGCTCTAGGACTCTTAATATTTGGCAAGACTATCTTGGTTTCTTTGATGGGTAGAATGTTTGGGATTTCCCTCATTTCTGCTATCAGAGTTGGTCTTCTTCTTGCTCCTGGGGGAGAGTTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTCCCCAGCTATCATCTTTGCTGTTTCTTGTTGTGGGCATTTCAATGGCCATCACTCCATGGCTAGCTGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAGAATGATGTGAGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGATAATTGCCCAACTACTTTCTGAGCGACTTATTCCGTTTGTTGCCCTAGATGTAAGAAGTGATAGAGTGGCAGTTGGTCGTGCACTGGATCTCCCTGTGTACTTTGGAGATGCTGGTAGTAGAGAGGTCCTGCATAAGGTTGGGGCTGAAAGGGCATGTGCTGCAGCAATAACTCTTGATACGCCTGGTGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCCCATGATGTAGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCTGCTGCTGTGCTTTCTCAGGCCAAACTCCCCACATCAGAGATTGCAGCAACTATAAATGAATTCAGATCTCGACATCTGGCTGAGCTCGCAGAGCTGTGTGAAGCAAGTGGTAGTTCTCTTGGTTATGGATATAATAAAATTATGAGCAAACCCAAATCTCAATCCACAGATTCATTAGATGAGACCCCAGTCTCAGAAGGGACACTGGCAATATGA 3582 0.433 MDMACGLPQSRILHGGVGTSYRHRSVGQFGCFNFRGRGFGCAVFGNSVSRLRGSGMSVSACWNNSRVVTDREFNVLNVKRSLSCKNNGLLMGSRVIWSKCQGNDSLAYVNGNGRNVDYVEGSGEDAGLGPVSSAELDAPLEEEGRKEGGGEIGVEEQSVDELKELLQKALRELEVAQINSTMFEEKVKKISETAIFLHDEAVNSWNDVNSNLDTIQELSNEELTAKEAVQNATMALSLAEAKLQVAIESLEAANEVPDSALGSNESNGDKDTVEEEKAILDAQEDIKECQATLANCEAELKHLQNRKEELQKELSKLQEIAEKAQLNAVKAEEDVTNIMLLAEQAVAFELEATKRVNDAEIALQRADKSNSNLNADAIETTQAQDVAVVPEEEKVVQGFSGDVTVERDTDLAIDDESLLSKISPETLSDKTSQILEDKPQSDYLSDNENSVQTKKQETPKDLARDNSSFAPKSLLKKSSRFFPASFFSFPEDETEPASVFQGLVLYIQKQFPKMIFGLLLMGAGVAFYANRVERNAQLLPQADVIMTSVEEVSSSAKPLVRRLQKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAVAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAVAVGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVVAGALGLLIFGKTILVSLMGRMFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSPQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQNDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLSQAKLPTSEIAATINEFRSRHLAELAELCEASGSSLGYGYNKIMSKPKSQSTDSLDETPVSEGTLAI 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01887 1193 Coils Coil 279 334 - -
Cca07g01887 1193 Gene3D - 993 1157 - -
Cca07g01887 1193 Pfam Sodium/hydrogen exchanger family 595 965 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca07g01887 1193 MobiDBLite consensus disorder prediction 430 467 - -
Cca07g01887 1193 Gene3D - 585 973 IPR038770 -
Cca07g01887 1193 ProSiteProfiles RCK N-terminal domain profile. 997 1119 IPR003148 GO:0006813
Cca07g01887 1193 MobiDBLite consensus disorder prediction 1172 1193 - -
Cca07g01887 1193 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1193 - -
Cca07g01887 1193 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 596 876 IPR004771 GO:0006812|GO:0008324|GO:0016021
Cca07g01887 1193 Pfam TrkA-N domain 998 1111 IPR003148 GO:0006813
Cca07g01887 1193 Coils Coil 152 179 - -
Cca07g01887 1193 MobiDBLite consensus disorder prediction 437 452 - -
Cca07g01887 1193 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1193 - -
Cca07g01887 1193 Coils Coil 356 376 - -
Cca07g01887 1193 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 994 1135 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01887 Cca-Chr7 45862723 45876741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01887 1 1193 Inorganic Solute Cotransporters AT4G00630 66.367 0.0 1420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01887 - - gmx:100798822 1942.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01887 07 45862723 45876741 Cca07g01887 07 45862723 45876741 ECH
Cca07g01887 07 45862723 45876741 Cca01g02228 01 50472563 50487144 PCT