Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01870 ATGGCCAGCCCGGAAGAAGCAAAGCTCGAAACTTTCATGCAGTGGCTACAGGCAAATGGGGTTGAGCTACGAGGTTGCAAAATCAAGTGGTGTGATTCCAAACGAGGGTTTGGCATCTTTTCTGATAAAGATGTTTCTGATGGGGTTTTGTTGGTTGTTCCCCTAGATTTAGCAATTACTCCAATGAGAGTGTTGCAAGATCCTCTTCTAGGACCAGCATGTAGGGCAATGTTTGAAGAAGGAAATGTTGACGACAGGTTACTAATGATGCTGTTACTGACTGTGGAGCGGTTGCGTAAGAATTCTCTATGGAAGCCGTACTTTGATATGCTTCCAACCACTTTTGGGAATCCACTTTGGTTTACTGATGATGAACTTCAAGAGCTAAGAGGAACAACATTATATCGTGCAACTGAATTGCAGAAGAAAAGCCTGCTTTCTTTGTATGAAACTAAAGTGAAGGATATAGTGAAGAATCTTTTGACTCTTGATGGAAATTCAGAGATTGAGGTGAGCTTTGAAGATTTCCTTTGGGCAAATTCAGTATTTTGGAGTCGTGCTTTGAACATTCCAATGCCTCGTTCTTATGTATTTCCAGAATTTCAAGATGCTCATGTCAGTTGCATTCCAGAAGCTGATGAAAACAGAAGCCAGGTTAAAAAATCTGACAATCTGACCAAGGAAGCGGCATGTAACACAATGATAGAAGACACTATGTGGGTAGAGGGTCTTGTCCCTGGCATTGATTTTTGCAACCATGATCTGAAGCCGATAGCAACATGGGAAATTGATGGAACTGGTTTAACAACAGGAGTTCCTTTCTCCATGTATCTTATTTCTGCTGCTCAAAGTCCCTTGCAGATTGATCAAGAAATTTCCATTAGTTACGGAAACAAGGGAAATGAGGAACTTCTGTATCTGTATGGTTTTGTCATTGATGATAACACAGACGATTATCTCATGGTCCACTATCCAGCTGAAGCAATTGATGCTATTTCCTTTTCAGAGTCCAAAAGCCAGCTTCTTGAAGTTCAGAAGGCTGAAATGAGATGTCTTTTACCCAAAACTTTGCTGGATAATGGATTTTTTCCACGTGGCACTCAAAACAGTGGAGAAAATAACAAAGGCAAAGTTGACCAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAGATGCCATCTTATGTAAACAAGCTGGTATTTCCTGAGAAATTTTTGACCACTTTGAGGACTATAGCCATGCAAGAAGATGAGCTTTTCAAGGTTTCCTCAATGCTGGAAGAGCTTGCTGGACCTGAAAGGGAGAGACAACTATCAGATACAGATGTCCAATCAGCAATATGGGAGGTCTGCGGTGATTCTGGAGCTTTACAAGTTCTTGTTGATCTTCTTCGTGTGAAGACATGCTAG 1410 0.4128 MASPEEAKLETFMQWLQANGVELRGCKIKWCDSKRGFGIFSDKDVSDGVLLVVPLDLAITPMRVLQDPLLGPACRAMFEEGNVDDRLLMMLLLTVERLRKNSLWKPYFDMLPTTFGNPLWFTDDELQELRGTTLYRATELQKKSLLSLYETKVKDIVKNLLTLDGNSEIEVSFEDFLWANSVFWSRALNIPMPRSYVFPEFQDAHVSCIPEADENRSQVKKSDNLTKEAACNTMIEDTMWVEGLVPGIDFCNHDLKPIATWEIDGTGLTTGVPFSMYLISAAQSPLQIDQEISISYGNKGNEELLYLYGFVIDDNTDDYLMVHYPAEAIDAISFSESKSQLLEVQKAEMRCLLPKTLLDNGFFPRGTQNSGENNKGKVDQVCNYSWSGQRKMPSYVNKLVFPEKFLTTLRTIAMQEDELFKVSSMLEELAGPERERQLSDTDVQSAIWEVCGDSGALQVLVDLLRVKTC 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01870 469 PANTHER SET DOMAIN-CONTAINING PROTEIN 4 467 - -
Cca07g01870 469 CDD SET_LSMT 32 311 - -
Cca07g01870 469 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 467 - -
Cca07g01870 469 Pfam SET domain 36 297 IPR001214 GO:0005515
Cca07g01870 469 Gene3D set domain protein methyltransferase, domain 1 5 311 - -
Cca07g01870 469 SUPERFAMILY SET domain 8 315 IPR046341 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01870 8 237 NAC Transcription Factor Family AT3G56570 25.514 2.07e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca07g01870 SET 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01870 - - gmx:100777394 855.129