LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g01867	ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTGAAGCCCTATGCGCGCAACGAAGGTTTTGATTTCTTGAAGAACAAGCGAGTTGCTGTGGACCTTTCGTTCTGGATTGTTCAGCATGAGACTGCCATCAAGGCACATGTCAGAAAACCCCACCTCAGGCTTACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGAGCGTTTCCTGTGTTCATTGTTGATGGGACTCCATCGCCGTTGAAATCACAGGCCAGGATTGCGAGATATTTCCGGTCTTCTGGCATTGAGTTGGCTAGCTTGCCGGTGCCTGAAGGTGTTTCAGCTGAGAGGAACCGTTTATTTTCAAGCCGTGTTCAAGAATGTGTGGAACTAGTTGAACTACTTGGAATGCCTGTACTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCTCAGTTAAATAGTGAAGGTCATGTGGATGCTTGCATGACAGCTGATAGTGATGCATTCCTCTTTGGGGCCAAATGCATTATAAAATGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAGTATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGCTGGAAATGATCATGATATGAATGGTGTTCGAGGGATTGGGGTTGATTATGCACTTCGTTTTGTTAAAGCTTTTAGTGAAGATGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATACTTCACAAATTCCCATCTGCATTAAAGTTGAGGAAGATATGGATATGGGTGAGAGCTCCCCAAATAGAAAACAACCTCATTGCTCATTCTGTGGGCATCCAGGCAGCAAAACAGATCACGTGAAGTTTTCCTGTGAATATTGTGTCACTAAGGATGATGAAGGTTGCAAGCAAAAACCAGACGGTTTTAAATGTGATTGCTTCTCCTGTGGTATGAATAGGAGACATAAGGAGCAAAAAAGACTGGAAAATTGGCACACAAAAATTTGTCACAAGATTGCACAGGAGCCAAACTTTCCCAAGGAAGAAATCATTGATATGTATTTATGCAATGATAATGGTTACTTTTCTGGAAGTGATAACCTTCACATTACATGGGGAAAACCCAATGTTGAGATGCTAATTGATTTTTTAAATTTCCATCAGCATTGGGAACCATCGTACATTCGTCGGACAATGTTCCCAATGATGTCCACCATCTTTTTGAGAGATATGACTAAAACTACTGCAGAAACTTTGTTATTTGGGCAATACGAGTTTGATTCCATAGAACGTGTGAAGACAAGATATGGACATCAGTTTTATGTGGTCAAGTGGAAACAGGCAAGGGGCAGCACTGTCCGTAAAGCTCCATCAGAGGAATCCAGTGTGCAACAAGATGTCAGAGAGCTTGATGAAACGTTGGATCTACTAGATGACGGCGATGTTCCTGTGATTCATGAAGATGATGGTTGTAGTTTTCTGCTCACAGATGAAAATATGGACCTTGTAGGAGCTGCTTTTCCAGCAGAAGTCAAAAGGTTTTGGCAGGAACAGGAACAGAAAAGAAGCAAGAATTCAATGTCAAGATTACAAGAAAATGAAAACTTAGCGTCACCAATTTCAAGGAGTATTCAGCTAAACATTACAGAGTTCTACCCATCAACCAAAGTTCAACATCGTCAAGCAAAACAAGGAGAAGGGTCATCCAAGAATATTGATAGCCAAGGCAGTGGAGGCTCAAAAATGAAAAGGAAAATGTCAAGTAGTCCTACTAAGCTTACAAAATCTGTGAGGCGTCGCCTTTTATTTGACTAG	1824	0.4161	MGVGGNFWDLLKPYARNEGFDFLKNKRVAVDLSFWIVQHETAIKAHVRKPHLRLTFFRTINLFSKFGAFPVFIVDGTPSPLKSQARIARYFRSSGIELASLPVPEGVSAERNRLFSSRVQECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACMTADSDAFLFGAKCIIKCFCPNSKEPFECYSMSDIEAGLGLKRKHLIAISLLAGNDHDMNGVRGIGVDYALRFVKAFSEDDILNRLHEIGKGNTSQIPICIKVEEDMDMGESSPNRKQPHCSFCGHPGSKTDHVKFSCEYCVTKDDEGCKQKPDGFKCDCFSCGMNRRHKEQKRLENWHTKICHKIAQEPNFPKEEIIDMYLCNDNGYFSGSDNLHITWGKPNVEMLIDFLNFHQHWEPSYIRRTMFPMMSTIFLRDMTKTTAETLLFGQYEFDSIERVKTRYGHQFYVVKWKQARGSTVRKAPSEESSVQQDVRELDETLDLLDDGDVPVIHEDDGCSFLLTDENMDLVGAAFPAEVKRFWQEQEQKRSKNSMSRLQENENLASPISRSIQLNITEFYPSTKVQHRQAKQGEGSSKNIDSQGSGGSKMKRKMSSSPTKLTKSVRRRLLFD	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g01867	607	MobiDBLite	consensus disorder prediction	521	541	-	-
	Cca07g01867	607	SUPERFAMILY	PIN domain-like	6	212	IPR029060	-
	Cca07g01867	607	Gene3D	-	197	260	-	-
	Cca07g01867	607	MobiDBLite	consensus disorder prediction	558	598	-	-
	Cca07g01867	607	SMART	xpgineu	127	197	IPR006086	GO:0004518
	Cca07g01867	607	MobiDBLite	consensus disorder prediction	558	607	-	-
	Cca07g01867	607	Pfam	XPG N-terminal domain	1	92	IPR006085	GO:0004518
	Cca07g01867	607	SMART	xpgn3	1	96	IPR006085	GO:0004518
	Cca07g01867	607	Gene3D	-	5	196	-	-
	Cca07g01867	607	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	197	413	IPR036279	-
	Cca07g01867	607	PANTHER	FLAP ENDONUCLEASE GEN-LIKE 1	1	593	-	-
	Cca07g01867	607	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	593	IPR006084	-
	Cca07g01867	607	Pfam	XPG I-region	130	212	IPR006086	GO:0004518
	Cca07g01867	607	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	25	39	IPR006084	-
	Cca07g01867	607	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	70	89	IPR006084	-
	Cca07g01867	607	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	126	143	IPR006084	-
	Cca07g01867	607	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	147	167	IPR006084	-
	Cca07g01867	607	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	202	217	IPR006084	-
	Cca07g01867	607	CDD	PIN_GEN1	2	201	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g01867	16	312	Core DNA Replication Machinery Family	AT5G26680	25.826	3.82e-18	85.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g01867	K15338		-	gmx:100779848	1002.28

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca07g01867	07	45624498	45629547	Cca07g01867	07	45624498	45629547	ECH