Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01862 ATGGTGGAAGATGGTGATGAGGTTGTGGTTGATGAACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTTGCCCTTGAAAAGGCAAGAGAGGTTAAGGGATTTGCTGGTAGATGGAAGATGATCATTGCAAAATTGGAACAGATCCCGTTGCGGTTATCAGATTTGTCAAGCCATCCATGCTTCTCAAGGAATGCTCTTTGTAAGGAGCAGTTGCAGGCTGTGTCGAAGACACTCAGGGAAGCAATTGAATTGGCCAAGTTGTGCATGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGCGATCTAGATGCATTGGCCGGGAAGCTTGAATTGAATTTGAGGGATTGTGGGCTTTTGATCAAGACTGGTGTGCTTGGTGAGGCTACTTTACCATTGCCTGTGTCTAGTTCTGTGGCAGAATCAGATGTTGCAACACACAACAACATAAGGGAATTGCTGGCACGCCTTCAGATCGGGCACTTGGAAGCAAAGCACAGAGCTTTAGACTGCGTGGTTGAGGCCATGAAGGAAGACGAAAAGAATGTTTTAGCCGTTCTTGGCCGGAGCAACATTGCTGCTATGGTTCAATTGCTTACAGCTACCTCTCCCAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCGCTTGCAGAATCTGGAAGCTGTGAAAATTGGTTAGTTTCTGAAGGAGTTCTTCCGCCTCTTATACGGCTTGTTGAATCAGGCAGTGCGGTGGGGAAAGAGAAGGCCACAATATCCCTTCAGAGGTTGTCGATGTCAGTGGAAACAGCCCGAGCAATTGTGGGACATGGTGGGGTTCATCCACTGGTTGAACTTTGTCAAACTGGTGATTCTGTGTCACAGGCTGCGGCTGCGTGTACTCTGAAGAACATATCAGCTGTTCCTGAGGTGAGACAAGCTTTGGCTGAAGCAGGGATTGTGAGGGTTATGATCAATCTGCTTAACTGTGGAATTCTGTTGGGTTCCAAAGAGCATGCAGCAGAGTGCTTGCAGAACCTCACTGCGAGCAACGAGAATCTAAGGAAGAGTGTTATATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAGGAATCTGCGGTCGGAGCATTAAGGAATTTGGTTGGATCAGTTCCTGAGGAATCATTAGTTTCTCTTGGTTTGATCCCCCGTTTGGTTCACGTGTTGAAGTCCGGATCCTTAGGCGCTCAGCAAGCTGCTGCGGCTGCAATATGTCGGGTTTGCAGCTCCTCAGATATGAAGAAAATGGTTGGTGAAGCTGGTTGCATCCCTCTACTTGTGAAGATGCTTGAGGCCAAGTCAAATAGTGCTAGAGAGGTTGCTGCTCAAGCAATTGCAAGCTTGATGATTGTGTCTCAGAATAAAAGAGAAGTGAAGAAGGATGATAAAAGCGTGCCAAACTTAGTACAGTTGCTTGATCCAAGTCCTCAGAACACTGCAAAAAAGTACGCAGTTACTTGCCTTGGGTCACTCTCCTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGGGCAATTGGATATCTGAAGAAACTTACTGAGATGGACATTCCCGGAGCTAAGAAGCTACATGAGAGGTTGGAAAGAGGGAAATTAAGAAGTTTGTTTAACAAGAAATAG 1680 0.4607 MVEDGDEVVVDERSTEDWLLHAQELVPVALEKAREVKGFAGRWKMIIAKLEQIPLRLSDLSSHPCFSRNALCKEQLQAVSKTLREAIELAKLCMKEKYEGKLRMQSDLDALAGKLELNLRDCGLLIKTGVLGEATLPLPVSSSVAESDVATHNNIRELLARLQIGHLEAKHRALDCVVEAMKEDEKNVLAVLGRSNIAAMVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSAVGKEKATISLQRLSMSVETARAIVGHGGVHPLVELCQTGDSVSQAAAACTLKNISAVPEVRQALAEAGIVRVMINLLNCGILLGSKEHAAECLQNLTASNENLRKSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVPEESLVSLGLIPRLVHVLKSGSLGAQQAAAAAICRVCSSSDMKKMVGEAGCIPLLVKMLEAKSNSAREVAAQAIASLMIVSQNKREVKKDDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRSLFNKK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01862 559 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 559 - -
Cca07g01862 559 Pfam Armadillo/beta-catenin-like repeat 429 467 IPR000225 GO:0005515
Cca07g01862 559 Pfam Armadillo/beta-catenin-like repeat 270 306 IPR000225 GO:0005515
Cca07g01862 559 Gene3D - 393 538 IPR011989 -
Cca07g01862 559 SUPERFAMILY ARM repeat 155 536 IPR016024 -
Cca07g01862 559 Gene3D - 141 392 IPR011989 -
Cca07g01862 559 SMART arm_5 429 469 IPR000225 GO:0005515
Cca07g01862 559 SMART arm_5 470 512 IPR000225 GO:0005515
Cca07g01862 559 SMART arm_5 389 428 IPR000225 GO:0005515
Cca07g01862 559 SMART arm_5 184 224 IPR000225 GO:0005515
Cca07g01862 559 SMART arm_5 349 388 IPR000225 GO:0005515
Cca07g01862 559 SMART arm_5 266 306 IPR000225 GO:0005515
Cca07g01862 559 SMART arm_5 307 348 IPR000225 GO:0005515
Cca07g01862 559 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01862 Cca-Chr7 45559545 45563232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01862 399 542 U-box Gene Family AT3G54790 27.778 5.78e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01862 - - gmx:100781453 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01862 07 45559545 45563232 Cca07g01862 07 45559545 45563232 ECH