Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01856 ATGAGTTTTGGGGGGTTTCTTGAGAACAAACAAAGTGGTGGAGGTGGTAGGATCGTAGCAGATATTCCTTACAGCAACGGTTCCAACCACAGCAACGATATAATGCCCTCTGGTGCAATCTCGCAGCCTCGTCTCGCCACTCCTACTTTGGCCAAATCCATGTTCAACTCTCCTGGCCTTTCTCTTGCACTTCAAAGTGATATAGATGGACAAGGGGATGTGAACAGATTAATGCCAGAGAGTTTTGAGCAAAATGGTTTGAGAAGGAACCGGGAAGAGGAGCATGAAAGCAGATCTGGCAGTGATAACATGGATGGTGCTTCTGGTGATGATTTTGATGCTGCCGACAACCCACCAAGGAAAAAGCGTTATCACCGACACACTCCTCAGCAAATTCAAGAACTTGAGGCGCTGTTCAAGGAGTGTCCTCACCCGGATGAGAAGCAAAGGCTTGAACTCAGCAGAAGGCTTAGTTTGGAAACAAGACAAGTAAAGTTTTGGTTCCAAAATCGGAGAACACAAATGAAGACACAATTGGAACGCCACGAGAATTCACTGCTAAGGCAAGAGAATGACAAGCTTAGAGCTGAAAACATGTCTATGAGGGAAGCCATGAGGAATCCTATATGCTCAAACTGTGGAGGTCCTGCAATGATTGGTGAGATTTCACTTGAAGAACAGCACCTCAGGATTGAGAATGCTAGATTGAAGGATGAACTAGACCGTGTTTGTGCACTTGCTGGGAAATTCTTGGGCCGCCCCATTTCCTCTTTAACAAGCTCAATTGGGCCTCCAATGCCAAACTCAAGTTTGGAGCTTGGTGTTGGTAGCAATGGATTTGGAGGTTTGAGCACTGTGCCTTCAACATTACCTGATTTTGGTGTGGGGGGTATATCAAGCCCCTTGGCCATGTTGTCACCTTcaactagaccaacaacaacaacaaATGTTGTCAATTCTGGCTTTGACAGATCAGTGGAGAGGTCTATTGTTCTAGAACTTGCTTTGTCTGCAATGGATGAGTTGGTGAAGATGGCTCAGACTGGTGAGCCTCTTTGGATCAGAAGCTTGGAAGGGGGAAGAGAAATTCTCAACCATGAGGAATACACAAGGACAATTACTCCTTGCATTGGCTTGAGACCCAATGGTTTTGTCACCGAGGCCTCTAGACAAACTGGCATGGTCATCATAAACAGCTTGGCCCTTGTTGAAACATTAATGGACTCGAATCGATGGTCAGAAATGTTCCCTTGTATGATTGCTAGAACCTCCACGGCTGAAGTGATATCTAGTGGAATAAACGGGACTAGAAATGGTGCCCTTCAACTAATGCATGCCGAACTTCAAGTCCTTTCGCCCTTGGTTCCGGTTCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCACGCTGAGGGGTTATGGGCTGTGGTAGATGTGTCCATAGATACCATCAGAGAAACTTCTGGTGCACCCACTTTTGTGAACTGCAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAACATGCAGAATACGACGAAAGCCAAGTTCATCAGCTCTATAGGCCCTTGTTGAGTTCAGGCACGGGGTTTGGTGCACAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCCTAGCTATTCTAATGTCCTCAGCAGCTCCCTCTAGAGAACATTCAGCCATAAGCGCAGGTGGAAGGAGAAGCATGTTGAAGCTGGCGCAGCGCATGACGAACAATTTCTGTGCTGGGGTGTGTGCCTCCACGGTGCACAAGTGGAACAAGCTGAACGCGGGGAACGTGGGAGAGGACGTGAGGCGTCTCTTCGACTTCCTCCGCGATGAGAGGCTGCGGAGCGAGTGGGACATCCTCTCCAACGGTGGTCCCATGCAGGAGATGGCTCACATCGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTTAGAGCCAGTGCTATTAATGCGAACCAGAGCAGCATGTTGATTTTGCAGGAGACGTGCACCGACGCGTCGGGGTCGCTTGTGGTGTACGCGCCGGTGGACATTCCCGCCATGCACGTGGTGATGAACGGCGGCGACTCTGCTTACGTGGCGCTTCTCCCGTCGGGGTTCTCCATCGTGCCCGACGGGTCCGGCGGCGGGGAGGATCAAGGCGGCGTCGCGTCGCAGGCGCGGGCGGGCGGGTGCCTCCTGACGGTGGCGTTCCAGATTCTGGTGAACAGCCTCCCGACGGCGAAGCTGACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATCTCGTGCACCGTTCAGAAGATTAAAGCCGCGCTTCACTGCGAGAGCTGA 2364 0.5042 MSFGGFLENKQSGGGGRIVADIPYSNGSNHSNDIMPSGAISQPRLATPTLAKSMFNSPGLSLALQSDIDGQGDVNRLMPESFEQNGLRRNREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTSSIGPPMPNSSLELGVGSNGFGGLSTVPSTLPDFGVGGISSPLAMLSPSTRPTTTTNVVNSGFDRSVERSIVLELALSAMDELVKMAQTGEPLWIRSLEGGREILNHEEYTRTITPCIGLRPNGFVTEASRQTGMVIINSLALVETLMDSNRWSEMFPCMIARTSTAEVISSGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSAAPSREHSAISAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAINANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFSIVPDGSGGGEDQGGVASQARAGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01856 787 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 618 784 IPR042160 -
Cca07g01856 787 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 618 IPR042160 -
Cca07g01856 787 SUPERFAMILY Bet v1-like 327 557 - -
Cca07g01856 787 SUPERFAMILY Homeodomain-like 104 178 IPR009057 -
Cca07g01856 787 Pfam START domain 333 557 IPR002913 GO:0008289
Cca07g01856 787 MobiDBLite consensus disorder prediction 81 128 - -
Cca07g01856 787 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Cca07g01856 787 Pfam Homeodomain 121 176 IPR001356 GO:0003677
Cca07g01856 787 Gene3D - 108 194 - -
Cca07g01856 787 Coils Coil 172 207 - -
Cca07g01856 787 CDD START_ArGLABRA2_like 328 556 - -
Cca07g01856 787 SUPERFAMILY Bet v1-like 579 774 - -
Cca07g01856 787 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 618 784 - -
Cca07g01856 787 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 66 618 - -
Cca07g01856 787 MobiDBLite consensus disorder prediction 1 21 - -
Cca07g01856 787 MobiDBLite consensus disorder prediction 85 101 - -
Cca07g01856 787 CDD homeodomain 120 178 IPR001356 GO:0003677
Cca07g01856 787 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Cca07g01856 787 SMART START_1 333 557 IPR002913 GO:0008289
Cca07g01856 787 SMART HOX_1 119 182 IPR001356 GO:0003677
Cca07g01856 787 ProSiteProfiles START domain profile. 324 560 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01856 Cca-Chr7 45375962 45381815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01856 1 787 Homeobox Transcription Factor Family AT3G61150 61.979 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca07g01856 START 1.2e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01856 K09338 - gmx:100787537 1418.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01856 07 45375962 45381815 Cca07g01856 07 45375962 45381815 ECH
Cca01g02194 01 50095438 50101360 Cca07g01856 07 45375962 45381815 ECH