Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01855 ATGAATATGATGCGAAGGTTGAAAAGCATTGCTTCTGGGAGGCCTTCCATTTCATCAGATCCGAGTGGGGATTGTACCACAAAAAGAGTTAAATTTGATCAAGAGACTGAAGGAAAGGTCAATGAGGAAACTTGTGCTACTGAGCGATGCGGAATAGATCAGGACCAGCATGTAGAGGCATCAAACGAAACTAGTTCCACTGTTTCTACAATGGCTAGAACTGAGAAGTCAGGTTATGATCAGCTTCCAAAAGAATTAAATGAAATGAAAATTGGAGACGACAAAGGAAAGAGCAACAACAATGAGAAGGATATGGAAGCAACTATTGTGAATGGTAATGGAACAGAAACAGGTCAAATAATTACAACTGCTATTGGTGGTCGTGACGGACAACCAAAGCGGACAATCTCATACATGGCAGAACGTGTGGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCAATAAAAAAGGTGTTGCAAGACAAGAGATATAAAAATAGGGAACTACAGGTTATGCGTATTCTTGACCATACTAACGTACTCAGACTAAAGCACTGTTTCTATTCAGCAGCTGATAAGGATGAGTTGTACCTTAATTTGGTTTTGGAGTATGTACCTGAAACTGTCTACAGAGTTTCAAAGCACTATATCAGAATGCACCAACATATGCCTATCATTTATGTGCAACTGTATACGTACCAGATATGCCGGGGTTTAAACTATTTGCATCATGTGATTGGAGTCTGTCATCGGGACATCAAACCCCAGAATCTGTTGGTTAATCCCCAGAGTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGCGAGCCCAACATATCATACATATGCTCTCGGTATTATAGAGCTCCAGAACTTATTTTTGGTGCAACAGAATACACTACTGCTATTGATATTTGGTCTGCTGGCTGTGTTTTGGCTGAGCTTCTTCTAGGACATCCAATGTTTCCAGGAGAGAGTGGGGTTGATCAGTTGGTAGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAATTCAAGTTTCCTCAAATTAAAGCTCACCCGTGGCATAAGGTTTTTCACAAGAAGATGCCTGCAGAAGCAGTGGATCTCGTGTCAAGGATGCTTCAGTATTCACCAAATCTTCGTTGCACTGCTTTGGAGGCATGTGCACACCCTTTCTTTGATGATCTGCGAGACCCAAGTGCATGCTTGCCAAATGGGCGAGCACTACCTCCTTTGTTCGATTTCACTGCTCAAGAACTGTCAGGCGTATCAGATGAATTGCGTAGGCGTCTCATTCCTGAGCATGCACAAAGTTGA 1404 0.4202 MNMMRRLKSIASGRPSISSDPSGDCTTKRVKFDQETEGKVNEETCATERCGIDQDQHVEASNETSSTVSTMARTEKSGYDQLPKELNEMKIGDDKGKSNNNEKDMEATIVNGNGTETGQIITTAIGGRDGQPKRTISYMAERVVGTGSFGVVYQAKCLETGEAVAIKKVLQDKRYKNRELQVMRILDHTNVLRLKHCFYSAADKDELYLNLVLEYVPETVYRVSKHYIRMHQHMPIIYVQLYTYQICRGLNYLHHVIGVCHRDIKPQNLLVNPQSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGHPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKKMPAEAVDLVSRMLQYSPNLRCTALEACAHPFFDDLRDPSACLPNGRALPPLFDFTAQELSGVSDELRRRLIPEHAQS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01855 467 Gene3D Phosphorylase Kinase; domain 1 123 217 - -
Cca07g01855 467 Gene3D Transferase(Phosphotransferase) domain 1 218 466 - -
Cca07g01855 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Cca07g01855 467 ProSiteProfiles Protein kinase domain profile. 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01855 467 MobiDBLite consensus disorder prediction 1 28 - -
Cca07g01855 467 ProSitePatterns Protein kinases ATP-binding region signature. 144 168 IPR017441 GO:0005524
Cca07g01855 467 PANTHER SHAGGY-LIKE KINASE 7 467 - -
Cca07g01855 467 Pfam Protein kinase domain 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01855 467 SUPERFAMILY Protein kinase-like (PK-like) 137 448 IPR011009 -
Cca07g01855 467 SMART serkin_6 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01855 467 CDD STKc_GSK3 133 425 IPR039192 -
Cca07g01855 467 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 7 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01855 Cca-Chr7 45331847 45336474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01855 144 431 Core Cell Cycle Gene Families AT1G76540 34.680 1.83e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Cca07g01855 Pkinase 3.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01855 K00924 - gmx:100786458 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01855 07 45331847 45336474 Cca07g01855 07 45331847 45336474 ECH