Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01853 ATGGTGCTGCGGGATCcgtcggtgcgcgtgcgggaggcggcggcggcggaggtggaggggcggcagagcgactgggcgtactcggcgccggtggtggcgCTGGACGTGCTGTGGAACGGCGCGTTCCTGGCGATTGGGATCGTCGTGCTGGCGCTGAGCTCCACGGAGGAGCCTTGCGTTCCTCTCAGGGCGTGGATTGTGGGGTACTTGTTGCAGGGCGCGTTTCACTCTCTCTGCGTCGTTTTTGAGTTCCGAAGGAGGAGGAACAGCAGTGGGACCCACGTCGTTGACCGTGCTGAATGGAGCTTCAGTTCCGAGAGTGATGAAGACTTTTATACTTCGGAGGAGTTTCTCGAGGGTGATGGAAGCAGCATCACAAAATTCATAGAGTCGGCAAATACCATGCTTTCATTCATATGGTGGATTGTTGGGTTCTACTGGGTAACTGCTGGTGGCCAGAGTTTGACAAGGGATTCACCTCAGCTTTACTGGCTTTGTATCACATTTCTTGCTTTTGACGTTGTGATTGTACTGATCTGTGTTGCTGTTGCATGTCTTATTGGCATCGCCGTTTGCTGTTGTCTGCCATGCATACTTGCTATTCTGTATGTAGTGACAGATCAGGAAGGGGCAACGAAGGAAGAGATTGACCAGTTGCCAAAATATAATTTCAGAATAATAAAGGAATTTAAGAAAGAAGGTGATATTGAAGAAACTTCCAGAGGAAAAATGATTGAATCTGACAGTGAGACAGCCAGCGAACATGTTATTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGATGATGGTGCTGAACTTAGAGAACTTCCTTGCAACCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTAATAAATGCTACCTGCCCTCTCTGCAAGTTTAACATTTTGAGGACTGGCAACCACCATCAAGAAGTTTGA 957 0.4263 MVLRDPSVRVREAAAAEVEGRQSDWAYSAPVVALDVLWNGAFLAIGIVVLALSSTEEPCVPLRAWIVGYLLQGAFHSLCVVFEFRRRRNSSGTHVVDRAEWSFSSESDEDFYTSEEFLEGDGSSITKFIESANTMLSFIWWIVGFYWVTAGGQSLTRDSPQLYWLCITFLAFDVVIVLICVAVACLIGIAVCCCLPCILAILYVVTDQEGATKEEIDQLPKYNFRIIKEFKKEGDIEETSRGKMIESDSETASEHVIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILRTGNHHQEV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01853 318 SMART ring_2 264 304 IPR001841 -
Cca07g01853 318 CDD RING-H2_RNF111_like 263 307 - -
Cca07g01853 318 PANTHER TARGET OF ERK KINASE MPK-1 1 318 - -
Cca07g01853 318 SUPERFAMILY RING/U-box 250 310 - -
Cca07g01853 318 Pfam Ring finger domain 263 305 IPR001841 -
Cca07g01853 318 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 318 - -
Cca07g01853 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 310 IPR013083 -
Cca07g01853 318 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01853 Cca-Chr7 45310342 45315628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01853 4 316 C3H Transcription Factor Family AT1G68070 51.266 5.94e-110 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01853 - - gmx:100795425 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01853 07 45310342 45315628 Cca07g01853 07 45310342 45315628 ECH