Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01843 atggtgagaggaaagactcagatgaggcgcatagagaacgccacaagcaggcaagtcactttttcaaaacgccgtaatggtttgttgaagaaggcctttgaactttcagtcctttgtgatgctgaagttgctctcatcattttctctccaagaggaaagctttatgaatttgcaagcaccAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCAGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAACTCTTGGGAGAGGGTTTGGGGTCATGCTCCTTAGAAGAACTTCAACAGATAGAACAACAGTTGGAAAATAGTGTAAACAATGTTCGTGCAAGAAAGAATCAGGTATACAAGGAACAAATTGAGCAACTAAAAGTAAAGGAAAAAGCCCTATATGCTGAAAATGCCAGGCTGTGTGAGCAGTTAGGTATCCAACCACAAGCAGAAGCAGAAGCAGCAACAAGGGATCCCAAAGAAAATCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACCAAGGTCTAGTTGA 642 0.3006 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASTSMQETIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLENSVNNVRARKNQVYKEQIEQLKVKEKALYAENARLCEQLGIQPQAEAEAATRDPKENQPYAESSPSSEVETELFIGLPRSS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01843 213 MobiDBLite consensus disorder prediction 177 213 - -
Cca07g01843 213 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Cca07g01843 213 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Cca07g01843 213 Coils Coil 121 170 - -
Cca07g01843 213 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca07g01843 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca07g01843 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca07g01843 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca07g01843 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca07g01843 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca07g01843 213 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca07g01843 213 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Cca07g01843 213 PANTHER MADS BOX PROTEIN 1 210 - -
Cca07g01843 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca07g01843 213 Coils Coil 73 107 - -
Cca07g01843 213 PANTHER MADS-BOX PROTEIN SOC1 1 210 - -
Cca07g01843 213 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01843 Cca-Chr7 45104139 45116633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01843 1 158 MADS-box Gene Family AT2G45660 77.848 8.20e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca07g01843 K-box 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01843 - - gmx:100037477 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01843 07 45104139 45116633 Cca01g02154 01 49390756 49404201 PCT