Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01831 ATGAGTTTCTTACAGGGAATAATTGATTCCTTCAACTCCATCTTCGTCTCCGATAACAATCCCAATTTTCCTTCAATGGAAGctccttctccttctccttctccttcGGTTTCCAACGAGCGCGTCGCCTACAAGCTCAAAGGCTACTTCGATTTGGCCACGCAGGAGATCGCCAAGGCCGTTAGGGCAGAGGAATGGGGCTTAGCCGACGACGCGCTTCTTCACTACAGGAACGCCCACTCCATCCTCGCCGAAGCCACTTCCACTCCCGTTCCCTCCTACATCACTTCCAGTGAGCAGCAGAAGGTGCAGTCCTATCGCCAGAAGATATCCAAATGGCAGAGTCAGGTTTCTGAGAGATTGCAGACTCTGAGTAGACGAGCTGGTAGCTCGTCTTCTAATCAGAGCACCTCAAACCTTGTCCAAACTGCTGCAGTTCCGATTAAGCCATCGAGTACTAGAAAAAATGTGCTACAAAAGCCCCCTCAAAGAACAGGTCAGGTGAATAACGTTGGAAGCCCCAAACCTAGTCAACCGTCTGGTGGAAATTATGATTCCAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGCCCCTCTGTTAGATGGGAAGATGTCGCTGGGCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTATTCACTGGTCTTCGAAGGCCAGCCCGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCTTCAGAATCACAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACATCAAAGTGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCCATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCCGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTGAAAAGAATATACATACCTTTACCGGATGGAAATGTTCGGAAGCTTCTACTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGAAGCTTGCAAAAGAGACAGAAGGATATTCTGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTCGAGAGTTGGGTGCTGACATTCTTACTGTCAAGGCTAATCAGGTAAGAGGACTGAGGTACGAGGATTTTAAGAAGGCAATGACAATCATCAGACCAAGCTTAAACAAGAGTAAGTGGGAAGAGCTTGAACGCTGGAATGAGGAATTTGGCTCTAATTGA 1434 0.4421 MSFLQGIIDSFNSIFVSDNNPNFPSMEAPSPSPSPSVSNERVAYKLKGYFDLATQEIAKAVRAEEWGLADDALLHYRNAHSILAEATSTPVPSYITSSEQQKVQSYRQKISKWQSQVSERLQTLSRRAGSSSSNQSTSNLVQTAAVPIKPSSTRKNVLQKPPQRTGQVNNVGSPKPSQPSGGNYDSKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDGNVRKLLLKHKLKGQAFSLPSRDLEKLAKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYEDFKKAMTIIRPSLNKSKWEELERWNEEFGSN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01831 477 Gene3D - 201 471 IPR027417 -
Cca07g01831 477 MobiDBLite consensus disorder prediction 124 184 - -
Cca07g01831 477 Gene3D - 373 455 - -
Cca07g01831 477 SMART AAA_5 238 374 IPR003593 -
Cca07g01831 477 PANTHER AAA DOMAIN-CONTAINING 4 477 - -
Cca07g01831 477 SMART smart 46 123 IPR007330 -
Cca07g01831 477 CDD MIT_spastin 46 124 - -
Cca07g01831 477 Pfam AAA+ lid domain 397 428 IPR041569 -
Cca07g01831 477 CDD AAA 227 372 - -
Cca07g01831 477 PANTHER BNAC04G50250D PROTEIN 4 477 - -
Cca07g01831 477 MobiDBLite consensus disorder prediction 124 185 - -
Cca07g01831 477 Gene3D - 38 128 - -
Cca07g01831 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 474 IPR027417 -
Cca07g01831 477 ProSitePatterns AAA-protein family signature. 344 363 IPR003960 GO:0005524|GO:0016887
Cca07g01831 477 Pfam ATPase family associated with various cellular activities (AAA) 242 372 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01831 Cca-Chr7 44930768 44937516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01831 201 427 Calmodulin-binding Proteins AT3G56690 42.797 1.58e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01831 K13254 - gmx:100780946 832.787