Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01829 ATGGCGACTAATAATCTCCCTGCAACAAAGTCCACCACGACGACGTCGTCTCAGGAGAAACGACACCGTTCGGTCTTCGAAGTTCCACACAACTTCTTCGACTCTTGTCGCCTTCTCTCTTCTCCTCACTCCTCCGTTTCCGACCACCACAGCACAGGCCCAACCCTCGAACCATCCCCAAACGACGTCGTCCTTGTCGACGCCCCTCAAAACGACGTCGTTTCCGCTCCCAGGCTGACCTGCAACACCTGTAAGACGCAATTCGATTCCCTTCAGGACCAGCGTTCCCATTTCAAATCCGACATTCATCGCTTCAACGTGAAGCTGACAGTTGCTGGGAAAAATATTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGAGTTTGTCAAAGACTATGACGTGTCAAGTATATCGGGATCAGAAAGTGATGATGACAGTGAAATCGAATCTCAGAGTCAAATTGCATCGCGTGACAAATCGAGTGAAAGTTTTATTATTAAACAGAAACTATTCTTCCGCCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGCTTGATTATGAATGTGACTGAAAATGTATTGTATGAGAATGAAAAGGCAGAGAGCGAATTGGTTGAGAAGTTGAAATCTCTGTCTGTTGAGCCCAGAGATAATACCCATTTGAGGATTGTTTTGCTTGCATCCGGTGGGCACTTTGCAGGTTGCGTCTTTGATGGTGATACTGTTGTGGCTCACAAGACATTTCACAGATATGTCGTAAGAGCCAAGGCAGGAAAAAAACAATCATCTAAAGATGCTTCTGGCAGGGCTGCACATTCTGCTGGGGCTTCTCTTCGTCGTTATAATGAACTTGCACTAAAGAAGGAAGTTCAAGAACTGCTTACTGCCTGGAAACCTTATTTTGATGCTTCCAATTGCATTTTTATACATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAGATCATATTTTACCAATCGGCAGAGTGCTGTTAGAAATATTGCTTTGACTGTTCGGAGGCCTACTTTAAGGGAAGCAAAGCGTGTATATAGCCAGTTGACCCAGGTAACCTATGAAGCAGACGAGAAGGAAGTTTTACAAAGCAACCAAGAGGATTTGGTATCAATTCACATCTCTAAAATAAATGGCAATCCAACCTCCAGCAAAGGGGACATGGCTGAGTTGGATGACAAAGATAAAGCAGAACCTTGTTCAAGTAAACAAAATGATGAACTCCCCATTTCAAGTAATGGAGAAAGTGAGAATGAGCTATCTGGTAAATCAACTCCTTTACATCAAGCAGCACAATCTGGCGACTCTCTAAAGGTTTTGGAGCTCCTGGATCAGGGCCTGGATCCTTGCATTAAAGATGAAAGGGGGCGGACCCCATATATGTTGGCAAATGACAAAGAAGTGAGGAATACTTTCAGAAGGTTTATGGCGTCAAATCTTGACAAATGGGATTGGCATGCTGCAAAAGTTCCCAGTGCATTGACCAAAGACATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCTAGAGCAAAACAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGTTGAAGCTGCCTTGCCTAAGAATGATTCCAAAACTGTAGAGAAGCAAGTAACTGCTTCAGCATCTATTAAGGGACAATCGCACTTAAAAAGTGGTGTGCATTTATCTAAAGAGGAAGAAATAAGAATGGCACAGGCTGCTGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGGAGAATGGCTGCCCTCAAAATTCAAGCTAAGAGTGCAACCACTGCACCTAGCATGTCAGAGCCTAAAAGTGGATTAGCTGGTGACATTTACTGTTCCTGCTGTAATTCATCACTTGCTGGTAAAGTTCCATTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAGGGAGATCCTAGAAGATCAATGA 2001 0.4363 MATNNLPATKSTTTTSSQEKRHRSVFEVPHNFFDSCRLLSSPHSSVSDHHSTGPTLEPSPNDVVLVDAPQNDVVSAPRLTCNTCKTQFDSLQDQRSHFKSDIHRFNVKLTVAGKNIVKEEDFEVLTSEFVKDYDVSSISGSESDDDSEIESQSQIASRDKSSESFIIKQKLFFRLQTGQRVSVWKCLIMNVTENVLYENEKAESELVEKLKSLSVEPRDNTHLRIVLLASGGHFAGCVFDGDTVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRYNELALKKEVQELLTAWKPYFDASNCIFIHAPSSSRQLLYDGERSYFTNRQSAVRNIALTVRRPTLREAKRVYSQLTQVTYEADEKEVLQSNQEDLVSIHISKINGNPTSSKGDMAELDDKDKAEPCSSKQNDELPISSNGESENELSGKSTPLHQAAQSGDSLKVLELLDQGLDPCIKDERGRTPYMLANDKEVRNTFRRFMASNLDKWDWHAAKVPSALTKDMEESQAAKQAEKDAKRKARAKQLKKLRKAKEKKAQVEAALPKNDSKTVEKQVTASASIKGQSHLKSGVHLSKEEEIRMAQAAEREKRAAAAERRMAALKIQAKSATTAPSMSEPKSGLAGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDQ 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01829 666 MobiDBLite consensus disorder prediction 396 411 - -
Cca07g01829 666 Coils Coil 578 614 - -
Cca07g01829 666 MobiDBLite consensus disorder prediction 413 438 - -
Cca07g01829 666 MobiDBLite consensus disorder prediction 1 15 - -
Cca07g01829 666 MobiDBLite consensus disorder prediction 384 438 - -
Cca07g01829 666 MobiDBLite consensus disorder prediction 532 574 - -
Cca07g01829 666 Pfam Vms1-associating treble clef domain 629 662 IPR041540 -
Cca07g01829 666 ProSiteProfiles Ankyrin repeat profile. 431 463 IPR002110 GO:0005515
Cca07g01829 666 SUPERFAMILY Ankyrin repeat 433 485 IPR036770 -
Cca07g01829 666 ProSitePatterns Zinc finger C2H2 type domain signature. 81 103 IPR013087 -
Cca07g01829 666 MobiDBLite consensus disorder prediction 552 570 - -
Cca07g01829 666 Pfam Bacteroidetes VLRF1 release factor 225 363 IPR041175 -
Cca07g01829 666 Coils Coil 507 545 - -
Cca07g01829 666 Gene3D - 393 494 IPR036770 -
Cca07g01829 666 MobiDBLite consensus disorder prediction 43 62 - -
Cca07g01829 666 MobiDBLite consensus disorder prediction 136 156 - -
Cca07g01829 666 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 16 662 - -
Cca07g01829 666 MobiDBLite consensus disorder prediction 43 58 - -
Cca07g01829 666 MobiDBLite consensus disorder prediction 1 22 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01829 20 613 C2H2 Transcription Factor Family AT1G01930 54.828 0.0 582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01829 07 44907493 44913394 Cca07g01829 07 44907493 44913394 ECH