Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01819 ATGGATAGCGAAAgtagtgataataacagtggtagtagtaatggtggtggtagACACTCTAGTAGTCCTTGTGGTGCTTGCAAGTTTTTGAGAAGGAGATGTGCACCAAGTTGTATCTTTGCTCCATATTTTGATACGGAGCAAGTCATCACCATTTGCTATGAAGCTCAATCAAGACTTAGAGATCCTATTTATGGTTGTGTTGCTCACATATTTGCCCTCCAACAACAGGCGGCGAACTTGCAAGCAGAACTCTCTTACTTGCATGGCCACCTTGCTCAAATGGAGGTATCCCACCCACCACCCACTCCTCCGCCGCAGCAGGCGGCGGCACCACCGGTTTTCTCAATGGCTGACCTACCGGCCACCACCATGGCGGCTGCAATACCGGTGACCTATGACTTGTCATCACTTTTTGAGCCAATGGGCCAATCTTCATGGGCCATGCAACAGAGGGGCATGGACCCACGTCACTTCATGGGTGGTGGTGCTCCATCAACCACAACCACTCAGTCTCCTCCAACAGCTCCTTCAAGCTCCAATGCATCACCATCTCTATCACTTTCTAAGTGA 573 0.4677 MDSESSDNNSGSSNGGGRHSSSPCGACKFLRRRCAPSCIFAPYFDTEQVITICYEAQSRLRDPIYGCVAHIFALQQQAANLQAELSYLHGHLAQMEVSHPPPTPPPQQAAAPPVFSMADLPATTMAAAIPVTYDLSSLFEPMGQSSWAMQQRGMDPRHFMGGGAPSTTTTQSPPTAPSSSNASPSLSLSK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01819 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 49 168 - -
Cca07g01819 190 MobiDBLite consensus disorder prediction 1 20 - -
Cca07g01819 190 Pfam Lateral organ boundaries (LOB) domain 23 48 IPR004883 -
Cca07g01819 190 Pfam Lateral organ boundaries (LOB) domain 48 88 IPR004883 -
Cca07g01819 190 PANTHER LOB DOMAIN CONTAINING PROTEIN 49 168 - -
Cca07g01819 190 MobiDBLite consensus disorder prediction 154 190 - -
Cca07g01819 190 MobiDBLite consensus disorder prediction 1 22 - -
Cca07g01819 190 MobiDBLite consensus disorder prediction 163 190 - -
Cca07g01819 190 ProSiteProfiles LOB domain profile. 22 129 IPR004883 -
Cca07g01819 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 6 48 - -
Cca07g01819 190 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01819 Cca-Chr7 44757491 44761710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01819 26 161 AS2 family AT2G45420 48.864 1.25e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca07g01819 LOB 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01819 K21994 - gmx:100790517 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01819 07 44757491 44761710 Cca01g02118 01 48626056 48630701 PCT