Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01815 ATGGAAGGAAGAGAAGGGATGAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCCTATCAGATGGCACCAAGGAGTGAGGTTCCAAGCCAGGGTGGTCCTGTTCCCCCTGAAGCAGCAACTGGAACTATGGGTGTCTCCCCAGTGAGTGTGGGATTGGATGGAACAGCAGTTAAGAAGAAAAGGGGTAGACCAAGGAAATATGGGCCTGATGGGTCTGTCACTATGGCATTGTCTCCCATGCCAATCTCATCTTCAGCTCCATTTTCTAATGACTTCTCATCTGGGAAGCGGGGGAAGCCGCGGGGGATGGAGTACAAGCTGCAGAAGAAATTTGGAGTGGATCATTTTGGTGACTCTATTGGTACAAACTTTATGCCTCATATCATTACCGTCAATGCTGGTGAGGACATTACTATGAAGGTTATATCTTTTTCCCAACAAGGACCCCGTGCTATATGCATCCTATCTGCTAATGGTGTAATATCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACATATGAGGGCCGGTTCGAGATACTTTCATTGTCCGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCCGGTGGGATGAGTGTGTCATTGTCAAGCCCAGATGGTCGTGTCGTAGGTGGTGGAGTTGCTGGACTCCTTGTAGCTGCCGGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTGCCAAGCAACCATCAAGATCAGAAACCAAAGAAACCAAAGTCCGATTATCCACCAACTACTGTTACACCTGCCATTGCAGTGTCTTCTGCACCACCCCCTACTAATGGCGAAAAAGAGGATGTCATGGGTGGACACCTGCTGCACAACTCAGGAACAACCGTCAACTCAAACCTCACTCCCCCCTCGTCCTTTCGCCGAGATAACTGGGTTAACATGCACTCAATGACCGACTCGATGAAGTCGGCCACTGATATTAACATATCTCTACCTGATAGTTAA 1008 0.4871 MEGREGMSSGVTVIGAEAPSAYQMAPRSEVPSQGGPVPPEAATGTMGVSPVSVGLDGTAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPFSNDFSSGKRGKPRGMEYKLQKKFGVDHFGDSIGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPSNHQDQKPKKPKSDYPPTTVTPAIAVSSAPPPTNGEKEDVMGGHLLHNSGTTVNSNLTPPSSFRRDNWVNMHSMTDSMKSATDINISLPDS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01815 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 247 - -
Cca07g01815 335 MobiDBLite consensus disorder prediction 1 79 - -
Cca07g01815 335 MobiDBLite consensus disorder prediction 243 281 - -
Cca07g01815 335 Gene3D - 129 260 - -
Cca07g01815 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 334 IPR039605 GO:0003680
Cca07g01815 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Cca07g01815 335 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Cca07g01815 335 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 334 - -
Cca07g01815 335 CDD DUF296 129 219 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01815 Cca-Chr7 44706310 44711688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01815 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.623 1.31e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01815 - - gmx:100777213 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01815 07 44706310 44711688 Cca07g01815 07 44706310 44711688 ECH
Cca07g01815 07 44706310 44711688 Cca01g02115 01 48562623 48569220 PCT