Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01807 TTTCTTTGGTTACTTTGCCTTCACCACCACCCCATTATTCACCACCACAAGAGAAGCAGCCTCAAGAGGAAGATCTAGGAGCAACCAGCACTGCTGAGGTGGCACTGACAAGAAAAAAGAAAGAGGAGTTGCGGGAACAGAAGAAGAAAGATGAAGAGGGTTTGCATCTCCTCACTTTGCTGCTTCAGTGTGCCGAAGCGGTTTCAGCTGAGAATCTAGAAGATGCCAACAAGATGTTGCTGGAGATTTCTCAATTGTCAACACCTTTTGGCACTTCAGCACAGCGCGTGGCGGCTTATTTCTCAGAAGCCATATCAGCAAGGTTGGTGAGTTCATGTTTGGGGATATACGCCACTTTGCCTCACACCCATCAAAGCCACAAGGTGGCATCAGCTTTCCAAGTTTTCAATGGTATTAGTCCTTTTGTCAAATTCTCACACTTCACCGCAAACCAAGCCATCCAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTGGATATAATGCAAGGGTTGCAGTGGCCAGGTTTGTTTCACATTCTAGCTTCAAGACCTGGTGGAGCCCCTTATGTGAGGCTCACGGGGCTTGGTACCTCCATGGAAGCACTTGAAGCCACGGGTAAGCGTTTGTCTGATTTTGCAAATAAACTTGGCCTTCCCTTTGAGTTCTTCCCCGTGGCTGAGAAAGTTGGGAACCTTGACCCTGAGAGGCTCAATGTTAGCAAAACCGAAGCCGTCGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACTTTATGGCTATTGCAGAGGCTGGCACCTAAAGTGGTGACAGTGGTGGAACAAGACCTTAGCAACACTGGTTCATTCTTGAGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTATTTGACTCTCTTGGTTCAAGCTATGGTGAGGAGAGTGAGGAGAGACATGTGGTGGAACAACAACTATTGTCTAGGGAGATTCGGAATGTGCTAGCTGTTGGGGGGCCATCAAGGACTGGAGAGCCAAAGTTTCACAACTGGAGGgaaaagcttcagcagtgtggctttagaggtatatctctagCTGGTAATGCTGCCACACAAGCTAGTCTACTCCTTGGTATGTTTCCCTCTGAGGGATACACCTTGGTGGAGGACAATGGCATCCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCCTTCCATAGTGGCACTGCCATTACACATCACAACTAG 1280 0.4664 SLVTLPSPPPHYSPPQEKQPQEEDLGATSTAEVALTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLRRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHSGTAITHHN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01807 425 MobiDBLite consensus disorder prediction 1 48 - -
Cca07g01807 425 PANTHER PROTEIN SCARECROW 39 414 - -
Cca07g01807 425 Pfam GRAS domain family 57 412 IPR005202 -
Cca07g01807 425 MobiDBLite consensus disorder prediction 34 48 - -
Cca07g01807 425 ProSiteProfiles GRAS family profile. 47 412 IPR005202 -
Cca07g01807 425 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 414 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01807 Cca-Chr7 44569244 44570974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01807 20 413 GRAS Transcription Factor Family AT3G54220 82.222 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca07g01807 GRAS 6.2e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01807 - - gmx:100806779 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01807 07 44569244 44570974 Cca07g01807 07 44569244 44570974 ECH