Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01804 ATGGGAAACTGCGGAACCAGAGAGGAATCTGCCGTAGTTTCCAACGCTCAAGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCGAGTGCGAGGAGCCAGAACGCCGGCAGCGAGAAGAGGCACGGTCACGGTCACAGGCACAATCTGAGCGAGTGCGCTTCGGATCTGAGCGAGTCGTGTTCGACGCCGCGCGGTAACAGTGGCGGCAACACGCTGCTCTACACGCACGTGATCGCGTTCACGCTGTACGAGTTGGAGACCATAACGAAGAGCTTCCGCGGCGACTACATCCTCGGCGAGGGAGGGTTCGGGACCGTTTACAAAGGCTACATTGATGAGAACGTGAGAGTGGGACTCAAATCGCTGCCTGTAGCGGTCAAAGTGTTGAACAAGGAGGGACTGCAGGGACATCGCGAGTGGCTCACGGAGGTGAATTTTCTAGGGCAGCTTAGgcatcctaatctggtgaagttgattgggtactgctgtgaggatgaccataggctgcttgtgtatgagttcatgTTTCGAGGGAGTTTGGAGAATCACCTGTTCCGAAAAGCAACTGTTCCTTTATCATGGGCTACAAGAATGATGATTGCTCTTGGAGCTGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGACCTGTAATCTATCGTGACTTCAAGACGTCTAATATACTATTGGACTCTGACTATACAGCCAAGCTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAAGGTGATGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGATATGCTGCCCCTGAATATGTAATGACTGGCCACCTGACAGCTAGGAGCGACATCTATAGCTTTGGCGTTGTTCTTTTGGAGCTTTTAACGGGAAGGAAATCTGTTGACAAGACCAGACCCGGAAAGGAACAGAGCTTAGTAGATTGGGCAAGGCCAAAGCTCAATGATAAGAGAAAGCTCCTACAAATAATTGATCCTAGACTGGAGAATCAATACTCAGTGAGGGCAGCACAAAAAGCATGTAGCCTGGCTTATTACTGTTTGAGTCAAAATCCCAAAGCGAGGCCACTAATGAGTGATGTAGTTGAGACATTGGAACCCCTACAAAGTTCAAGTGTTGGTGCAGGTGAAGTCTCATTATCTGGATCAAATAGTGGAAGTGCTGGTCCTTTTGCGATGAACAAAATCTCTGACTACCGAATGCGTCACAAGTTTTCAAACAATGTTGGTCCTGGTGCTTCTTGTCGGTCGCCAAACCCAAATTGCTCACCAGGTGGTCCAGCAGCATTACGGGTCAGATGA 1317 0.4692 MGNCGTREESAVVSNAQVQQLHHATSLGASARSQNAGSEKRHGHGHRHNLSECASDLSESCSTPRGNSGGNTLLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDIYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGEVSLSGSNSGSAGPFAMNKISDYRMRHKFSNNVGPGASCRSPNPNCSPGGPAALRVR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01804 438 MobiDBLite consensus disorder prediction 27 50 - -
Cca07g01804 438 Gene3D Phosphorylase Kinase; domain 1 60 175 - -
Cca07g01804 438 Gene3D Transferase(Phosphotransferase) domain 1 176 383 - -
Cca07g01804 438 CDD STKc_IRAK 99 373 - -
Cca07g01804 438 MobiDBLite consensus disorder prediction 415 438 - -
Cca07g01804 438 PANTHER OS01G0588500 PROTEIN-RELATED 39 425 - -
Cca07g01804 438 ProSiteProfiles Protein kinase domain profile. 93 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01804 438 Pfam Protein tyrosine and serine/threonine kinase 98 370 IPR001245 GO:0004672|GO:0006468
Cca07g01804 438 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 39 425 - -
Cca07g01804 438 ProSitePatterns Protein kinases ATP-binding region signature. 99 128 IPR017441 GO:0005524
Cca07g01804 438 SUPERFAMILY Protein kinase-like (PK-like) 68 371 IPR011009 -
Cca07g01804 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01804 Cca-Chr7 44529895 44533975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01804 81 370 Glycoside Hydrolase AT3G07070 54.608 9.02e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca07g01804 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01804 - - gmx:102662348 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01804 07 44529895 44533975 Cca07g01804 07 44529895 44533975 ECH