Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01791 ATGGCTGCAAATTCTGGGAATATATCATTTGCATCGTCTCAGTCTAGTTCACAGGTTCATGGGGACACTGATTCTGCCCAGGTTGCAGTGTGTTCTCATTGCCAAAAGGCCCTATCACCTGATAATGAAATGGCAAGTGATCTTGCTAGCAGTGGTGTGTGTGGTGATTGTAAATTTTTGTTACTTGAAGATTATGGGAGTCATACAGTTAGCCAAAGCTCACGGAGGAGGCTTAGAGGAAGATTTAGACACAACAGTTCTGAATCCGTGGAGAATAATTTATCACAACTGATCCCCCATATGGTTAATACTGTGAGGCAACATCAATCACCTGCATATGGGGAGGATGATCAACTTGTAGATGGTGATGCCTCTGCTTGGTCAGTGCAATTTCCTAGTACACATACTACCCCTAGTGGGTCTAGAAGGTGGAGGCAGGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTGGAATTCTCTTTATGGTGACAATGAATCAATTGCTAGTTTTAGACGCTACAGGGTTGGTGAGACTGATTCTTTCTCTCACAGTGCTTATGGAGGTGACTCTGATATCTCTGTGGATGCACGTAGTTTTGTAGGCACTGGAATCTTTAATTTACCAGATGAAAGAGATGAGTTTGATAGTGACACTGACATAGATCCTATGCATGCTGGCCTAAGCCAATGGATTACAgatgaagaggatgaggatgaagatgaagacgaagatgacgaagatgaagacgaggatgaggacgaggatgaagatgaagatgaagatggagaggaggcagaagaggaggatagagaatgggaattagctgagactgaggaagctgaagccacagcCCGCCTTCCAATTTTTTTCACCTCAAGTCCACGTGAGGACAGGGATCAAATTCATTGGCAACAAAGGTTTAATTCAACTGAATCTGAGGGAATGTTCAGCCAGATAATCAGGGATACCTGGCATGCTTTGGAGGATGTTGATTTACCTCATAGAGCAAACTTTGGGGATTATCTTGATGTTAGACGTTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCTTCTGTGTCTTTTGTGAATAATCTGCCGCATGTAGTCATTGGCAAGGAACATGAGAAACATGGTGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCACTTGGCACTGAAGTAAGTCAGCTTCCCTGCTCTCACCTTTATCACATTAATTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACTGATGATAAAGATTATGAAGAGGGAAAGCAGAACATTGATGCTAGAAATGTGATCCATGAGAGGCAGCAAATAGAAGTAACGGATGATAGCTCCTCCGATGTTTCTGATGGAGGCGATGTGAATGAAGAGGATGATACTAGTCAAGGTGGTATAAGGCAGAGAGTTGTGAGCTCAGGTTCTACTGCGAATTCCTCTGCAACAAGAAGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTCGGTCTAGTGGGCATTGTTCTTGTCTTGTGGTTAGGTAATAACTCTCAGATTGAAGGGAGTAGACATCTGGGTGGTCACTATTTGGCTGGGCAAAATCAGCATGCTGTTCATGCTTATGCCTCTTCAAACCAGAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1740 0.396 MAANSGNISFASSQSSSQVHGDTDSAQVAVCSHCQKALSPDNEMASDLASSGVCGDCKFLLLEDYGSHTVSQSSRRRLRGRFRHNSSESVENNLSQLIPHMVNTVRQHQSPAYGEDDQLVDGDASAWSVQFPSTHTTPSGSRRWRQVLSDTDSDGFDNWNSLYGDNESIASFRRYRVGETDSFSHSAYGGDSDISVDARSFVGTGIFNLPDERDEFDSDTDIDPMHAGLSQWITDEEDEDEDEDEDDEDEDEDEDEDEDEDEDGEEAEEEDREWELAETEEAEATARLPIFFTSSPREDRDQIHWQQRFNSTESEGMFSQIIRDTWHALEDVDLPHRANFGDYLDVRRFEDLLEHLAENDSSRRGAPPASVSFVNNLPHVVIGKEHEKHGELVCAICKDVLALGTEVSQLPCSHLYHINCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDARNVIHERQQIEVTDDSSSDVSDGGDVNEEDDTSQGGIRQRVVSSGSTANSSATRSGRGRWFFLAAAPIVGLVGIVLVLWLGNNSQIEGSRHLGGHYLAGQNQHAVHAYASSNQRESRSRRWWCPF 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01791 579 PANTHER OS06G0101300 PROTEIN 303 507 - -
Cca07g01791 579 SMART ring_2 394 434 IPR001841 -
Cca07g01791 579 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 303 507 - -
Cca07g01791 579 MobiDBLite consensus disorder prediction 445 508 - -
Cca07g01791 579 SUPERFAMILY RING/U-box 382 441 - -
Cca07g01791 579 Pfam Ring finger domain 394 435 IPR001841 -
Cca07g01791 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 441 IPR013083 -
Cca07g01791 579 MobiDBLite consensus disorder prediction 1 21 - -
Cca07g01791 579 MobiDBLite consensus disorder prediction 208 293 - -
Cca07g01791 579 MobiDBLite consensus disorder prediction 490 508 - -
Cca07g01791 579 ProSiteProfiles Zinc finger RING-type profile. 394 435 IPR001841 -
Cca07g01791 579 MobiDBLite consensus disorder prediction 234 278 - -
Cca07g01791 579 MobiDBLite consensus disorder prediction 445 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01791 Cca-Chr7 44354147 44357493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01791 23 579 C3H Transcription Factor Family AT5G01980 41.003 3.45e-110 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01791 - - gmx:100797923 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01791 07 44354147 44357493 Cca07g01791 07 44354147 44357493 ECH