Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01789 ATGGAAGGGAACAACGCCGACCTCTTCAGACcctcctcctccccctccgcctccccccgccgctactccgccatcctctccccctccaccatcatccAGGCCCCGCTCTCGCTGCTCCTCGAATATTCCGGCATCCTCCCCCCCAGGTCCAACCACCACACCCACCCCACCCCCGACGCCGTCAACAACGACGCCGGCGAGGTTTccattaggatcatcggctccgcggagcaggagcagcagcagcagcagcaccaccacaatcatcatcagcatcatccCAGGGAGGACGAAACTACCCCTCTCGCCGGGGGAAACGACGCCGTGTTGGCCTCGACGGATTCGTCTTACCAGAGATATGACATTCAGCATGCCGCCAGGTGGATTGAGCAGGTGTTGCCGTTTTCCTTGCTTCTATTGGTGGTCTTCATCAGGCAGCATTTGCAAGGGTTTTTTGTGACCATTTGGATTGCTGCTGTGCTTTTCAAGTCGAATGATATTCTGAGGAAACAAACTGCGCTGAAGGGAGAGAGGAAGATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGCGCTTCATGTCGTTGGCGTTTATTGGTGGTATCAAAATGATGATCTAATGTATCCCTTGATCATGCTTCCTCCTAAGGATATACCGCCTTTCTGGCACGCGATTTTCATCATAATGGTGAATGATACTTTAGTGCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCCGTGGCCGAAATTATCGTAAACAGGGCCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGAAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTGCTACGCTGTAAACATATTTTCTGTGAAGACTGTGTCTCAGAGTGGTTTGAGAGAGAAAGAACCTGCCCATTGTGCAGGGCTTTGGTAAAACCCGCAGATCTTAGGTCATTTGGAGACGGCTCTACTAGCCTGTTTTTCCAGTTATTCTGA 1236 0.4223 MEGNNADLFRPSSSPSASPRRYSAILSPSTIIQAPLSLLLEYSGILPPRSNHHTHPTPDAVNNDAGEVSIRIIGSAEQEQQQQQHHHNHHQHHPREDETTPLAGGNDAVLASTDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLIGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01789 411 Pfam Zinc finger, C3HC4 type (RING finger) 348 391 - -
Cca07g01789 411 MobiDBLite consensus disorder prediction 7 21 - -
Cca07g01789 411 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 105 411 IPR044235 GO:0061630|GO:1904294
Cca07g01789 411 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 3 92 IPR044235 GO:0061630|GO:1904294
Cca07g01789 411 SMART ring_2 350 387 IPR001841 -
Cca07g01789 411 MobiDBLite consensus disorder prediction 77 107 - -
Cca07g01789 411 MobiDBLite consensus disorder prediction 1 21 - -
Cca07g01789 411 ProSiteProfiles Zinc finger RING-type profile. 350 388 IPR001841 -
Cca07g01789 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 398 IPR013083 -
Cca07g01789 411 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 105 411 - -
Cca07g01789 411 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 92 - -
Cca07g01789 411 SUPERFAMILY RING/U-box 342 393 - -
Cca07g01789 411 ProSitePatterns Zinc finger RING-type signature. 365 374 IPR017907 -
Cca07g01789 411 CDD RING-HC_RNFT1_like 349 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01789 Cca-Chr7 44339903 44344293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01789 3 411 C3H Transcription Factor Family AT5G01960 71.395 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01789 - - gmx:100818546 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01789 07 44339903 44344293 Cca07g01789 07 44339903 44344293 ECH