Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01770 ATGGCTTCCCTACTCCCTTCAACTGCAACCACACTTCAACATAATCACACAATCTGCTTCTCTCCTCTGAAACCCACCACCCCAATTAACGTTTCCTTCTCAACGAACCGTTTCAAGAGTAGCTCTGGAAAGTGCAATGCACTTTTTGATAACTTCCCCAAAGACTTGTTGGAGACCACTTTTCACGTGGACCAGTTTCCTGTGTTCCAATCAGTGTTAATGAAGTTTCAGAATGTAACTGAAGACTTATCAGACATGCAGAGGTGGGGGTTTGTGATAGTTGCAGGGCTAACATGGGCTTATTTAACTGCAAGGCCCGGTGTTCTTGTTGGTGCCATTGATGCATTCCTTTTGGCTCCTATCCAATTGGTTTTGGACAGTTTATCCGGAAGGAGAAATCTGAAGAGGACTGATTTTCTTATTGGAGATAAGCTAGGAGAAGGGTCATTTGGTGTTGTTTATTCAGGTGTTTTGGTTCCAAAGAATGTAGATGTACAAGAGTGGATGCAGAAAAGTGGAAGAGGAAAGGTCACAAAGTTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAGAAGGTAAAGGTTGGGATCGAAGGGGCAGAGGAATTTGGAGATTTTGAGGAGTGGTTCAATTACAGACTCTCTAGAGCAGCACCTGAAACATGTGCTAAGTTTCTGGGAAGTTTTGTAGCCGATAAAACCAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGGAAGATCTCTTGCTGATTACATGGCTGATCAAAGATTCCCTTCAAACTTAGAGTCTACCATGTTTGGACGTGTATTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATCATTACATCTCTTAAGAAAATTCACGACACAGGCATAGTTCACAGGGATGTTAAGCCTGCCAACTTGGTGGTAACAAAACGGGGCCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCAATTGTACCCCTTTGGATCGTGACTACTGTCCACCTGAACTATATGTGCTACCTGAAGAAACACCAAGTCTTCCACCAGAGCCAATTGCAGCTTTCCTTTCACCAATCTTGTGGCAGTTAAAAAGTCCTGATTTGTTTGATATGTATTCTGCTGGCATTGTACTCCTGCAAATGGCAATTCCAACCTTAAGATCTCCAGCTGCTTTGAAGAATTTTAACTTGGAGATAAGAACATGTGGATATGATTTGAACAAATGGAGGGCATCTACCCGCATGAGGTCTGACTTCCAAATTCTTGATAATGACTCTAGTAGAGGGTGGGACTTAGCAACAAAGCTTATCTCCAAAAGAGGCCGCTGCAGTCCTTTCGAAATTAAGCTTAAGCACAAAGTGATCTGCTTAGAAATGCCATGGAGAGCTCTATGA 1464 0.4208 MASLLPSTATTLQHNHTICFSPLKPTTPINVSFSTNRFKSSSGKCNALFDNFPKDLLETTFHVDQFPVFQSVLMKFQNVTEDLSDMQRWGFVIVAGLTWAYLTARPGVLVGAIDAFLLAPIQLVLDSLSGRRNLKRTDFLIGDKLGEGSFGVVYSGVLVPKNVDVQEWMQKSGRGKVTKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGGRSLADYMADQRFPSNLESTMFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNCTPLDRDYCPPELYVLPEETPSLPPEPIAAFLSPILWQLKSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEIRTCGYDLNKWRASTRMRSDFQILDNDSSRGWDLATKLISKRGRCSPFEIKLKHKVICLEMPWRAL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01770 487 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 464 IPR044803 GO:0004674|GO:0009579
Cca07g01770 487 Pfam Protein kinase domain 289 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01770 487 Gene3D Transferase(Phosphotransferase) domain 1 278 479 - -
Cca07g01770 487 Gene3D Phosphorylase Kinase; domain 1 127 249 - -
Cca07g01770 487 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 464 - -
Cca07g01770 487 SMART serkin_6 139 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01770 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Cca07g01770 487 SUPERFAMILY Protein kinase-like (PK-like) 136 459 IPR011009 -
Cca07g01770 487 ProSiteProfiles Protein kinase domain profile. 139 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01770 Cca-Chr7 44082249 44086451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01770 139 338 MAP Kinase Kinase Kinase AT3G13530 25.123 3.64e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Cca07g01770 Pkinase 1.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01770 - - gmx:100795624 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01770 07 44082249 44086451 Cca07g01770 07 44082249 44086451 ECH