Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01754 ATGGGGTGTTTCACTGTATTGAAGGGAAAGAAGAAAAAGTCTGATCAGATTGCATATGTAAAACGCTTAAGCCATAAAGAGCATGTACCTACAGTATTGCCCGAACCTCAAACTCACACTCGCTCACTCCAGTCTGCTCCTCCTAGTTTTAGGACCAGAGTAAAACCCATTAATCAAGTCAATCTCAATAGAACGCGAACATTATCTGCTCCATCAACTCTTGATGCAGCAGAACAAGATGCTTTGGCCTCAATTGAGTATGAGGAACAAGAAGAGTCAAAGCACCGAGCTGGATCAATGAAGGAGCAGCGTTCATCTAGTCCACAACCTTTACCACTTCCATCCCCTCATGGAGGTGGTGCATTAAGGGCTGTTGGCAGCTTTAAGTCGGTGACAGCTAGTGGTCCTCTATATGCATCGGGGCCTTTGCCACTCCCACCTACTGGGTCACTTCGGAATTTTCTGTATGATGAAATTTCTGCTGCTTGCCACAATTTCTCTTCTGATAGATGCATGTCAGAATGTCTTTCGTCCACCATATATAAGGCTTCCTTTGGTGATGATGTATCAAGTTCAAAGAAGTTTGAAGCCACTGTCACACGACTTCACCCATCATCTCAGGGTTTGAAGGAATTCATAACTGAAGTTAATACTCTTGCATCTTTGCAACATCCAAACCTCTGTAAATTGCTAGGGTTTCATGCACGAGAGGGTTCAGAACATAGAATGTTGGTTTATGAGAGGCTATACCATGGAAGCTTGGATCGCTTATTGTATGGGAGATCTGATGGGCCATCTATTGATTGGAATACAAGAATGAAAATTGCTATATGTGCAGCACAAGGTCTAACTTTCTTGCATGAAGAAGGGCCTTTTCAGGCAATGTACAATGAATTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAGCTTTCAGGATACGGTTGTGTCGGACATATTCCCGAGGAAGAGATTTCAAGCAGTTCTTCAGCTGTTGGAAACCTATCAATGGAGACACTGGAGAAAGGAATGCTCACTCCGAAGAGCAACGTATGGAGTTTTGGAATTTTTCTTCTGGAGCTACTCACAGGAAGAAAGAATCTTGACAGCCGTCACCCCAAGGAAGAGAGGAATTTAGTGAAGTGGAGCCGGCCTTTCCTAGCCGACAACTACCGTCTGTCCTTGATCATGGATCCTCAACTCAAAGGTCGCTTTCCTTCTAAAGCAGCAAGAACAATAGCTGACATTGCACAACGATGCCTTCAGAAGGAGCCATCAGAGAGACCTACCATGAGAACCGTTGTTGAGCATCTCAAAATGATACAGGATCTGAAATACTCGTGCCGGTTCCCGCTGCAAGAGCCAGCATCAAACTCTGGAAAACACATGTCAAGATCACCGAGTCTTAATGGCATCATTTGCCCTGCACCAAGGTTGAGTTTCTCACCATCACCACCATCAGGAGTCCCAGTACCTGTTTCACCTCCAAGATGGTCTGGAGTGCCGATCCTCCCGCCACTTGCTTGTTCGTCCAGCCTCTCTTTGGAGGAGCTTGATAGGCAGGAAAGCCGCAAGTCATCATCCTCAGCCTCTAGAAGGGCTAGTGTTGAAGGAttttga 1629 0.4518 MGCFTVLKGKKKKSDQIAYVKRLSHKEHVPTVLPEPQTHTRSLQSAPPSFRTRVKPINQVNLNRTRTLSAPSTLDAAEQDALASIEYEEQEESKHRAGSMKEQRSSSPQPLPLPSPHGGGALRAVGSFKSVTASGPLYASGPLPLPPTGSLRNFLYDEISAACHNFSSDRCMSECLSSTIYKASFGDDVSSSKKFEATVTRLHPSSQGLKEFITEVNTLASLQHPNLCKLLGFHAREGSEHRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAICAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADNYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSERPTMRTVVEHLKMIQDLKYSCRFPLQEPASNSGKHMSRSPSLNGIICPAPRLSFSPSPPSGVPVPVSPPRWSGVPILPPLACSSSLSLEELDRQESRKSSSSASRRASVEGF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01754 542 Gene3D Phosphorylase Kinase; domain 1 147 247 - -
Cca07g01754 542 Gene3D Transferase(Phosphotransferase) domain 1 249 453 - -
Cca07g01754 542 MobiDBLite consensus disorder prediction 35 55 - -
Cca07g01754 542 PANTHER OS01G0822200 PROTEIN 44 541 - -
Cca07g01754 542 MobiDBLite consensus disorder prediction 518 542 - -
Cca07g01754 542 MobiDBLite consensus disorder prediction 87 123 - -
Cca07g01754 542 PANTHER OS01G0588500 PROTEIN-RELATED 44 541 - -
Cca07g01754 542 MobiDBLite consensus disorder prediction 28 55 - -
Cca07g01754 542 SUPERFAMILY Protein kinase-like (PK-like) 145 451 IPR011009 -
Cca07g01754 542 MobiDBLite consensus disorder prediction 87 101 - -
Cca07g01754 542 ProSiteProfiles Protein kinase domain profile. 166 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01754 542 Pfam Protein tyrosine and serine/threonine kinase 180 441 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01754 Cca-Chr7 43824809 43830141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01754 145 445 Receptor kinase-like Gene Family AT4G02010 37.255 7.39e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Cca07g01754 PK_Tyr_Ser-Thr 6.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01754 - - gmx:100809117 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01754 07 43824809 43830141 Cca07g01754 07 43824809 43830141 ECH
Cca07g01754 07 43824809 43830141 Cca01g02020 01 47111036 47115131 PCT