Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01751 ATGGAAGCATTGACCATGCAACGGCGTTTTCTGGAGACGGAGCTGAGCATGCCGCCGTCGTACGGCAACGGCACGCGCGCATCGTTCATCAGCGACGCCAACTTCGACACGAACATGGTGATAATCCTGGCGGCGCTGCTGTGCGCGTTGGTGTGCGCGCTGGGGCTGAACTCGATCGCGCGGTGCGCGGTGCGGTGCGGACGGCGGTTAGGCCACGAGAcggcggagcaggcggcggcgcggctcgcggggacggggctgaagcggcgCGAGCTCAGCCGGATACCGGTGACGGTGTACGGCGGCGGAGGAGAAGAGATTCCGGTGACGGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAGGGTGACAGGGTGCGAGTGCTGCCAAAGTGCAACCACGGCTTCCACGTGAAGTGCATTGACAAGTGGCTCTCCTCGCACTCTTCCTGCCCCAACTGCCGCCACTCCCTCCTCGAGAAACCCGCCTCCgcgccggagggtggccgcggcggcggcggcgacgtcgTGGTGGTGGTCGAGCAGGCGAGTTAA 552 0.5326 MEALTMQRRFLETELSMPPSYGNGTRASFISDANFDTNMVIILAALLCALVCALGLNSIARCAVRCGRRLGHETAEQAAARLAGTGLKRRELSRIPVTVYGGGGEEIPVTECPICLGEFEKGDRVRVLPKCNHGFHVKCIDKWLSSHSSCPNCRHSLLEKPASAPEGGRGGGGDVVVVVEQAS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01751 183 PANTHER RING-H2 FINGER PROTEIN ATL74 6 164 - -
Cca07g01751 183 CDD RING-H2_EL5_like 111 154 - -
Cca07g01751 183 SUPERFAMILY RING/U-box 105 161 - -
Cca07g01751 183 SMART ring_2 112 153 IPR001841 -
Cca07g01751 183 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Cca07g01751 183 Pfam Ring finger domain 111 154 IPR001841 -
Cca07g01751 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 162 IPR013083 -
Cca07g01751 183 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 6 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01751 Cca-Chr7 43771888 43773260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01751 6 179 C3H Transcription Factor Family AT3G10910 51.648 9.52e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01751 K19040 - gmx:100810195 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01751 07 43771888 43773260 Cca07g01751 07 43771888 43773260 ECH