Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01725 ATGGATCAGAAGGGAAGTGTGCTTATGCAAAGATATGAGCTTGGGAAATTATTAGGTCAAGGAACCTTTGCAAAGGTCTACCATGCTAGGAACCTTATAACTGGCATGAGTGTGGCCATTAAGATAGTTGATAAAGAAAAGGTTTTGAAAGTTGGAATGGTAGATCAGATTAAGCGTGAAATTTCTGTGATGAGATTAATCAGACATCCACATGTGGTTGAGCTTTATGAGGTAATTGCCAGTAAAACCAAAATTTACATTGTCATGGAGTATGCAAAAGGTGGTGAGCTCTTTAACAAGGTAGTCAAAGGAAGGCTCAAGGTGGATGTTGCTAGGAAATATTTTCAGCAACTGATCAGTGCAGTTGACTACTGCCACAGCCGGGGGGTGTGTCATCGAGATTTAAAGCCCGAAAATCTACTGTTGGATGAAAATGAGAATTTGAAGGTTTCAGATTTTGGGTTGAGTGCCCTTACTGAATCTAAGAGGCAAGATGGTTTGCTCCATACTACATGTGGAACCCCTGCCTATGTTGCTCCAGAAGTAATAAACAGAAAGGGTTATGATGGGATGAAAGCTGATATATGGTCATGTGGGGTAATCTTGTTTGTTCTATTGGCTGGTCATCTTCCATTCCATGACTCAAATCTGATGGAGATGTACAGGAAAATTGGTAAAGGGGAATTCAAATTTCCTAAATGGTTTGCACCCGATGTTCGCCGGTTATTGTCCAGAATACTTGATACAAATCCAAGGACCAGGATATCAATGGCCAAGATTATGGAAAGTTCTTGGTTTAAAAAGGGGTTGCAGAAGCCTACTATAATTGCAACTGAAAACGAAGAACTAGCCACTCTGGATGCTGCTGATGGAGTATTTGAAGCTTGTGAGAATGGAGGTCCTATTGCCGAGCCAAAGCAAGAACAGGCCAAGCCTAGTAACTTAAATGCTTTTGATATTATCTCCTTCTCAACTGGTTTTGATCTATCTGGTTTGTTTGAGGACACTGTTCTCAAGAAAGAGATGCGATTTACGTCGAAGAAGCCGGCCTCAGTCATAATCTCAAAGTTGGAAGAAATTTGTAAGCGGCTTCGGTTGAGAGTAAGGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTCCAAGGAAGGCAGGAAAGGGTTTTTGGGTGTTGATGCTGAGATCTTTGAGATCACACCACACTTCCATATGGTGGAACTTAGAAAGTGCAATGGGGATACCATGGAGTACCAGAAGCTTTTCAAACAGGATATTAGACCAGCACTTCAAGACATTGTTTGGACCTGGCAAGGAGAACAACCACAGCAACATGAAGTAGTCCAGGAAGAAGACcagcagcagcagcagcagcCTACCCATACTGCTTAg 1389 0.4111 MDQKGSVLMQRYELGKLLGQGTFAKVYHARNLITGMSVAIKIVDKEKVLKVGMVDQIKREISVMRLIRHPHVVELYEVIASKTKIYIVMEYAKGGELFNKVVKGRLKVDVARKYFQQLISAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALTESKRQDGLLHTTCGTPAYVAPEVINRKGYDGMKADIWSCGVILFVLLAGHLPFHDSNLMEMYRKIGKGEFKFPKWFAPDVRRLLSRILDTNPRTRISMAKIMESSWFKKGLQKPTIIATENEELATLDAADGVFEACENGGPIAEPKQEQAKPSNLNAFDIISFSTGFDLSGLFEDTVLKKEMRFTSKKPASVIISKLEEICKRLRLRVRKKDGGLFKLEGSKEGRKGFLGVDAEIFEITPHFHMVELRKCNGDTMEYQKLFKQDIRPALQDIVWTWQGEQPQQHEVVQEEDQQQQQQPTHTA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01725 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cca07g01725 462 CDD CIPK_C 316 430 - -
Cca07g01725 462 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 447 - -
Cca07g01725 462 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Cca07g01725 462 Gene3D Kinase associated domain 1, KA1 314 435 - -
Cca07g01725 462 PANTHER - 2 447 - -
Cca07g01725 462 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Cca07g01725 462 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01725 462 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cca07g01725 462 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01725 462 MobiDBLite consensus disorder prediction 442 462 - -
Cca07g01725 462 Gene3D Transferase(Phosphotransferase) domain 1 3 313 - -
Cca07g01725 462 Pfam NAF domain 312 370 IPR004041 GO:0007165
Cca07g01725 462 CDD STKc_SnRK3 11 265 - -
Cca07g01725 462 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01725 Cca-Chr7 43346196 43350123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01725 1 442 CBL-interacting serine-threonine protein kinases AT5G58380 66.593 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca07g01725 Pkinase 5.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01725 K07198 - gmx:100803787 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01725 07 43346196 43350123 Cca07g01725 07 43346196 43350123 ECH
Cca07g01725 07 43346196 43350123 Cca05g01345 05 31504274 31506993 ECH
Cca07g01725 07 43346196 43350123 Cca01g00590 01 7479319 7482177 ECH