Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01718 ATGGCTACTACATGTTTCTCCATGACCATACCAATCTTCAAAATTCGTTTCTTCTTATTCTCATGCTTTATTGGGATAGTTTCATCTCAATTATCCCCTGATTTTTACTCCAAAACGTGTCCTAATGCACTTTCAACCATTAAGACCGCAGTGGATAATGCTGTGAAGAATGAGGCTCGCATGGGAGCATCACTTCTACGACTCCATTTCCATGATTGTTTTGTTCAAGGATGTGATGCCTCAGTGCTATTAAATGATACATCAAGTTTCACTGGTGAACAGACAGCACGTCCCAACATTAATTCCCTAAGGGGTTTTGATGTAATAGACAGTATAAAGTCTCAAGTGGAGAGCCTATGTCCTGGTGTTGTTTCTTGTGCTGATATTCTTGCCGTAGCCGCAAGAGACTCTGTTGTTGCTCTTGGTGGATCTAGTTGGACAGTGCAACTGGGTAGAAGAGACTCAACCACAGCAAGTTTTAGTTCAGCATCAGACTTGCCCACTCCCCTTTCCAATCTAACTCAACTTATCGATACTTTCTCTAAGAAAAATTTCACTACAGAGGAAATGGTTGCTTTGTCAGGGTCTCACACAATTGGCCAAGCTAATTGTGTAAGGTTCAGAACAAGGATTTACACCAACACCAACATAGATTCATCTTTTGCAACATCATTGCGAGCAAATTGTCCTAGCATAGGTGGTGACAACAGTTTGTCTCCTCTTGACACCACCAGCCCAACCACCTTTGACAATGCTTACTTCAAGAATTTGCAGAGCCGAAAGGGTCTCTTGCACTCAGATCAAGAGCTTTTCAATGGAGGATCCACTGATTCTCAAGTAAATGCTTACAGCACCGATCCTTCACGTTTCAAAACTGACTTTGCCAATGCAATAGTTAAAATGGGAAACCTAAGCCCACTTACGGGGTCTAGTGGCCAGATTAGGACCAACTGTTGGAAGACCAATTAA 969 0.4221 MATTCFSMTIPIFKIRFFLFSCFIGIVSSQLSPDFYSKTCPNALSTIKTAVDNAVKNEARMGASLLRLHFHDCFVQGCDASVLLNDTSSFTGEQTARPNINSLRGFDVIDSIKSQVESLCPGVVSCADILAVAARDSVVALGGSSWTVQLGRRDSTTASFSSASDLPTPLSNLTQLIDTFSKKNFTTEEMVALSGSHTIGQANCVRFRTRIYTNTNIDSSFATSLRANCPSIGGDNSLSPLDTTSPTTFDNAYFKNLQSRKGLLHSDQELFNGGSTDSQVNAYSTDPSRFKTDFANAIVKMGNLSPLTGSSGQIRTNCWKTN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01718 322 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 SUPERFAMILY Heme-dependent peroxidases 30 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 CDD secretory_peroxidase 30 321 IPR033905 GO:0004601|GO:0042744
Cca07g01718 322 ProSiteProfiles Plant heme peroxidase family profile. 30 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PANTHER PEROXIDASE 23 322 - -
Cca07g01718 322 Gene3D - 34 318 - -
Cca07g01718 322 Gene3D Peroxidase, domain 2 167 301 - -
Cca07g01718 322 PANTHER PEROXIDASE 72-RELATED 23 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cca07g01718 322 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 Pfam Peroxidase 48 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca07g01718 322 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01718 Cca-Chr7 43213769 43218361 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01718 26 322 Peroxidase AT5G05340 63.333 5.26e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01718 K00430 - gmx:100815671 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01718 07 43213769 43218361 Cca01g01996 01 46721648 46723667 PCT