Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01714 ATGGATTCTAGGGAGAAAAGAAGAGCAGCACTGCAACACACGTTGCAACAACTTCGCGATGTTACAAACTCCACTTCTCTGAACAAAGCCTCAATTATTGTAGATGCCTCAAAATACATAGAGGAATTGAAACAAAAGGTGGAGGGACTCAACTCAGAGTTGGGGATCGCTGAATCATCATCATCAACATCTCAAATTGATGAACTACCTATGGTAATAGTGAAAACCCTAAAAAAGGGTTTCCTCATTAATGTGGTTTTGGAAAAGAATTGCCCCGGTATGCTCGTCTCTATACTCGAAGCCTTCGAAGAACTGGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCTGTTGGAAAAGAAAGTCACAAGAACGACAGTGTTGACGCGCAAGTGGTAAAGCAAGCAGTGTTGCGAGCAATCAAGAACGCGAACTAA 459 0.4292 MDSREKRRAALQHTLQQLRDVTNSTSLNKASIIVDASKYIEELKQKVEGLNSELGIAESSSSTSQIDELPMVIVKTLKKGFLINVVLEKNCPGMLVSILEAFEELGLDVLDARVSCEDSFQLEAVGKESHKNDSVDAQVVKQAVLRAIKNAN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01714 152 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 57 IPR036638 GO:0046983
Cca07g01714 152 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Cca07g01714 152 Coils Coil 1 21 - -
Cca07g01714 152 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 151 - -
Cca07g01714 152 CDD ACT_UUR-ACR-like 92 148 - -
Cca07g01714 152 Coils Coil 33 60 - -
Cca07g01714 152 Gene3D - 4 59 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01714 Cca-Chr7 43133252 43135320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01714 3 128 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 28.025 8.10e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01714 - - gmx:100527466 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01714 07 43133252 43135320 Cca05g01655 05 35938490 35939978 ECH
Cca07g01714 07 43133252 43135320 Cca01g01990 01 46469446 46471369 ECH
Cca07g01714 07 43133252 43135320 Cca07g01714 07 43133252 43135320 ECH
Cca07g01714 07 43133252 43135320 Cca05g01331 05 31330512 31332682 ECH
Cca07g01714 07 43133252 43135320 Cca01g00600 01 7646423 7648577 ECH