Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01710 ATGGAGATTTTGATGCAGTTGTTATCGCTTGAGCTTTATCTTTGGCATTCCCTACAAATTTTTGCAAATGGAATGACAGATCTCGCTAGTTATGGAAGTCTTGAGCATGATATTGAGCAAATATGCAAGGACAATGGCAAGGCTGAGGATGGTGTTAATTTTATTTCAAATGGTAGTCCTTTTGGTGCAACACTAGAATTTGCAATAAGCATTGCTCATAAAAGTGTCTATTTTAATTTTACTTCTCGTGAGTCTTCATTGAATTTGGAAGGCACAAATGCAAGGTTAGATTGTGCTAATATGCAACCAAGAACAAGTATTGGTGATGGATTTCGTATTAGTGTGTCAAGTACACCTAGTTGTTCAAGTGGAGGATCCGGACCAGATGACATAGAATCACTAGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGTGTTTCACTTGATGGGTTTGGCACTCAATCTCCTTCCACAATAGATGTGTTGATTCCTAAGCCTTTAGAGTCAAGTGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTACGACACATTGCTCTAGTAACTAGGCAAGGAGAGGTTTTTACTTGGGGAGAAGAATATGGGGGAAGACTTGGTCATGGAAATGATAAAGATTTTGGTCGCCCTCAACTTGTTGAAGTTTTGGCAGTTACTAATATAGATTTTGTTGCTTGTGGAGAGAATCATACATGCGCTGTATCTACATCTGATGATCTTTTCTCATGGGGTGATGGTACATATAATGTTGGACTTCTCGGTCATGGAACTAATGTTAGCCATTGGATACCAAAGAGAGTTAGTGGTCCTTTAGAAGGACTTCAAGTTATATCTATTGCATGTGGCACATGGCATTCAGCACTAGCTACTTCTAATGGGAAACTGTTTACCTTTGGTGATGGAACATTTGGTGTTTTAGGTCATGGAAATAGAGAAAGTGTGGCATATCCAAAGGAGGTACAATTATTAAGTGGACTGAAAACTATTAAAGTTGCATGTGGAGTATGGCATACTGCAGCTATTGTAGAGGTTACTTTTCAATCAGGTTCAAATGTTTCATCTAGAAAGCTTTTCACTTGGGGCGATGGCGACAAATATCGCTTGGGACATGGAAACAAGGAAACATACCTTCAACCCACATGTGTCTCTACACTTATTGAATATAATTTCCACCAGATAGCTTGTGGACACACTATGACTGTTGCTCTTACTACATCTGGTCATATATTTACTATGGGAAATGTTGAATATGGTCAACTAGGAAATCCTTTAGCTGATGGAAAAGTACCTATCCTAGTACAAGATAAGTTAGTGGGTGAATTTGTTGAGGAAATATCATGTGGATCTCATCATGTTGCTGCCTTGACATCAAGAAGTGAATTATATACTTGGGGGAGAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAGGATAGAAAATCTCCAACACTTATTGAATCCTTGAGAGATAGACATGTAAAAAATATTTCTTGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCTATTTGCACTGGTTGTAGACAACCATTTGGTTTTACTAGAAAGAGACATAATTGTTATAATTGTGGATTGGTGCATTGTCATAGTTGTAGTTCAAGAAAAGTATTGAAAGCAGCATTAGCTCCAACACCAGGAAAACCTCATCGTGTGTGTGACTCTTGTTATAATAAGCTTAAAGCTGTTGAGGCAGGTAATGCTGCCAATCTTAATAGAAAAATCACTACTGCACCTCGTAATTCCATAGACGTCAATAGGGAAAAATTTGGCCAAGGAGAAATAAAGTCTGCAAGACTTATTTTGCCACCTATCATAGATCCATTAAAATACAGTGATATGAGGACTAATAAGTTGGGAAACAAATATGATTATTCTTCTATGCTTATAACTTCCCAAGTTCCATCACTTCTACAATTAAATGATATTGCATTCGGAAGTTCAATAAATTCCACTCAAAGCATTATGAAGCCTGCTAGAGctcctagtccaccaccaactccacctctcaactcaagaccaacATCTCCTTATTCAAGAAGACAAAGTCCACAACGTTCTAGAACTTCAGGATTTTCTAGAAGTCTTATTGATAGTCTGAGGAAGACAAATGAACTTTTGAACCAAGAAGTTTCAAAATTGCAAAACCAAATCCAAAGTTTGAAGCTAAGAAATGACAAAGAAATTCAAAAGCTCCAGAAAAACATCTTAGAAGCTACCTCCTTGACAGCTGAAGAAAATTCTAGGCATAAAGCAATGAAAGAATCTTTTGAGTCTACCGTAAATCAGTTGAAGGAAATGATTGAGAAGTTGCCATCAGAAATTTTAGATAATGAAAGTTGGAAAACTGTACTTACTCGAGCTGAGGATTTTCTAAAAGAAAATTTAGAATTTGAATCACCTTTGACATCTTCAAGTATGATTCCCCAACAACCAAATGTACCTGATACACTTGACTCAAATAGTAGCTCTTCTAAGCTAGAAGAACAAAAAATAGAAGAAAATCATGAAACTATAGGTGTTGATCCATTATCACAAGATGGAGAAAATGTTCCTCAAGAAAGCAATAACTCATCTTTATCAAACAATGAAACATCAATGCCTTCACAAAACTCTGAAAATGATTCAAGATCTCAAGAGTCTTCAAGATCTAGCAAAGAAGGAGAAACACATGTCATTGAACAATTTGAACCTGGCGTTTATGTGACACTAATAGTAAAGCCTGGTGGTGTCAAAGTGTTTAAACGAGTTAGATTCAGCAAACGAAGGTTTCATGAACATCAAGCAGAAGAATGGTGGAACAAAAACAAAGATATGGTGCTTAGAAAATATAGTATTCAAGCTACAACTTCTGAAGGTACTAGGTCATCTAATAACACTCTACCCCCACCACCACCCACCGAAGAAAATATTGAGGCAACATCTTCCTAA 3003 0.3646 MEILMQLLSLELYLWHSLQIFANGMTDLASYGSLEHDIEQICKDNGKAEDGVNFISNGSPFGATLEFAISIAHKSVYFNFTSRESSLNLEGTNARLDCANMQPRTSIGDGFRISVSSTPSCSSGGSGPDDIESLGDVYIWGEVWADGVSLDGFGTQSPSTIDVLIPKPLESSVVLDVQQIASGVRHIALVTRQGEVFTWGEEYGGRLGHGNDKDFGRPQLVEVLAVTNIDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTNVSHWIPKRVSGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVAYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHIFTMGNVEYGQLGNPLADGKVPILVQDKLVGEFVEEISCGSHHVAALTSRSELYTWGRGANGRLGHGDIEDRKSPTLIESLRDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHSCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEAGNAANLNRKITTAPRNSIDVNREKFGQGEIKSARLILPPIIDPLKYSDMRTNKLGNKYDYSSMLITSQVPSLLQLNDIAFGSSINSTQSIMKPARAPSPPPTPPLNSRPTSPYSRRQSPQRSRTSGFSRSLIDSLRKTNELLNQEVSKLQNQIQSLKLRNDKEIQKLQKNILEATSLTAEENSRHKAMKESFESTVNQLKEMIEKLPSEILDNESWKTVLTRAEDFLKENLEFESPLTSSSMIPQQPNVPDTLDSNSSSSKLEEQKIEENHETIGVDPLSQDGENVPQESNNSSLSNNETSMPSQNSENDSRSQESSRSSKEGETHVIEQFEPGVYVTLIVKPGGVKVFKRVRFSKRRFHEHQAEEWWNKNKDMVLRKYSIQATTSEGTRSSNNTLPPPPPTEENIEATSS 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01710 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 415 466 IPR000408 -
Cca07g01710 1000 PRINTS Chromosome condensation regulator RCC1 signature 303 317 IPR000408 -
Cca07g01710 1000 PRINTS Chromosome condensation regulator RCC1 signature 246 262 IPR000408 -
Cca07g01710 1000 PRINTS Chromosome condensation regulator RCC1 signature 404 422 IPR000408 -
Cca07g01710 1000 PRINTS Chromosome condensation regulator RCC1 signature 462 483 IPR000408 -
Cca07g01710 1000 PRINTS Chromosome condensation regulator RCC1 signature 196 212 IPR000408 -
Cca07g01710 1000 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Cca07g01710 1000 SUPERFAMILY FYVE/PHD zinc finger 519 587 IPR011011 -
Cca07g01710 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 301 352 IPR000408 -
Cca07g01710 1000 CDD FYVE_like_SF 529 581 - -
Cca07g01710 1000 SMART fyve_4 517 586 IPR000306 GO:0046872
Cca07g01710 1000 MobiDBLite consensus disorder prediction 825 849 - -
Cca07g01710 1000 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 339 349 IPR000408 -
Cca07g01710 1000 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 180 190 IPR000408 -
Cca07g01710 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 246 300 IPR000408 -
Cca07g01710 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 194 245 IPR000408 -
Cca07g01710 1000 SUPERFAMILY RCC1/BLIP-II 135 520 IPR009091 -
Cca07g01710 1000 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 48 976 - -
Cca07g01710 1000 MobiDBLite consensus disorder prediction 683 697 - -
Cca07g01710 1000 MobiDBLite consensus disorder prediction 872 902 - -
Cca07g01710 1000 MobiDBLite consensus disorder prediction 698 719 - -
Cca07g01710 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 414 IPR000408 -
Cca07g01710 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 300 349 IPR000408 -
Cca07g01710 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Cca07g01710 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 194 242 IPR000408 -
Cca07g01710 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 247 296 IPR000408 -
Cca07g01710 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 414 463 IPR000408 -
Cca07g01710 1000 Pfam Regulator of chromosome condensation (RCC1) repeat 365 411 IPR000408 -
Cca07g01710 1000 Pfam FYVE zinc finger 519 585 IPR000306 GO:0046872
Cca07g01710 1000 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 48 976 - -
Cca07g01710 1000 ProSiteProfiles BRX domain profile. 914 969 IPR013591 -
Cca07g01710 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 532 591 IPR013083 -
Cca07g01710 1000 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 523 585 IPR017455 -
Cca07g01710 1000 MobiDBLite consensus disorder prediction 679 719 - -
Cca07g01710 1000 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Cca07g01710 1000 Coils Coil 721 755 - -
Cca07g01710 1000 Gene3D - 113 360 IPR009091 -
Cca07g01710 1000 Gene3D - 361 531 IPR009091 -
Cca07g01710 1000 MobiDBLite consensus disorder prediction 970 1000 - -
Cca07g01710 1000 MobiDBLite consensus disorder prediction 850 864 - -
Cca07g01710 1000 MobiDBLite consensus disorder prediction 825 915 - -
Cca07g01710 1000 Pfam Transcription factor regulating root and shoot growth via Pin3 914 968 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01710 Cca-Chr7 43004090 43011420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01710 911 971 Major Intrinsic Protein MIP AT1G31880 37.705 8.58e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01710 - - gmx:100779684 1472.99