LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g01688	ATGAGGACATCTTTCACTCATCTTCTTTCCAACAATAATAGTAGTAACATGACCATGAATGATCATAACAACTGGGGAACTTCTGATATTAATCATGATCAAGTTGGACTTGACGTTCCCAAGTTCAAGTCTGTTCAACCTCCCTCACTACCCATTTCTCCCTCTCCAATCTCCCCTTCTTCTTACTTGCCTTTTTCAACTGCTTTCAGCCCTTCTGAGTTCTTCAACTCACCCATGTTTCTTCCTTCTCCAAATATTTTTGCATCTCCTACTACTGAGGCTTTGGTTGGCCAGAGCTTCAACTGGAGGAACGGTTCAGGAGAAGAACAACAACGTGACAAGGGGGATGAGAAAAACTACTCTGACTTCTCTTTCCAACCCCAAATTCAATCTTCCTCAAGCATGTTTCAAGGGCAGGAACCACTTAAGAAACAAGACATGTGGAAATTCAATGAAGCTACAAAGCAAACTGAATTTTCATCTGAGATGACAGCAACAAAATCTGAATACCCTTTAAGTCAAAGTTTTTCCTTAGGAATGGAAGCAGGAAAATCAGAAATGCAAAGTAATTCAGTTCCGAGGTCTGGTAATTTTGACTACATTAACGCATCTCAAACTGTTAGAGAACAAAAGAGATCAGATGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGTACACATCCAAATTGCTCAATGAAGAAGAAAGTAGAGAGGTCTTTGGATGGACAAATTACTGAAATAGTATATAAGGGTCATCATAACCACCCAAAACCACAGTCTAGAAGAACAAACTCTCAATCAATTCACCAACCTTCTTCATCTTGCACCAACTCGGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGATCATTTCTCCATACAGGAAGATTCTTCGGCTTCTGTTGGAGAGGAAGAGTTTGAGCAAACATCACAAACCAGTTACTCTGGAGGAGATGAAGATAGTCTTGGACCAGATGCCAAAAGATGGAAGGGAGATAATGAAAATGATGGCTATTCCGTCTCTGGGAGTAGAACTGTGAGAGAGCCTAGAGTGGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGTTTTAGGTGGAGGAAATATGGACAGAAAGTAGTCAAAGGAAACCCCAATGCAAGGAGCTACTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGCGAGCTGCACATGACATCAAATCTGTGATCACAACCTATGAAGGGAAACACAACCATGATGTACCTGCTGCACGTGGTAGCGCAAGCTATAACATGAACAGAAATTCTGTGAACAGCAACATACCGGCGCCTATAAGACCCTCGGCAGTGAACTGTTATTCTAGCTCATCAAGTTTCACAAATTCTCTCTGTAATAATACTAGGCTTCCAGCAACCGGAAATCAAGAATCATTTTCACTGGACAAGTTCAAGAACCCTGGAAGTTTTGGCTATTCGGCTCTTAACAAATCAGTGGGTTCATTTACCAATCACGCGCAAAACTCAGATGCTGCATACTCAAGGGCTAAGGATGAGAGGAAGGATGACTCATTCCTTCAGTCTTTTCTGTCAAAGGACTTCTAA	1659	0.4141	MRTSFTHLLSNNNSSNMTMNDHNNWGTSDINHDQVGLDVPKFKSVQPPSLPISPSPISPSSYLPFSTAFSPSEFFNSPMFLPSPNIFASPTTEALVGQSFNWRNGSGEEQQRDKGDEKNYSDFSFQPQIQSSSSMFQGQEPLKKQDMWKFNEATKQTEFSSEMTATKSEYPLSQSFSLGMEAGKSEMQSNSVPRSGNFDYINASQTVREQKRSDDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSMKKKVERSLDGQITEIVYKGHHNHPKPQSRRTNSQSIHQPSSSCTNSGISDQSVVTLGNPQMDHFSIQEDSSASVGEEEFEQTSQTSYSGGDEDSLGPDAKRWKGDNENDGYSVSGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKSVITTYEGKHNHDVPAARGSASYNMNRNSVNSNIPAPIRPSAVNCYSSSSSFTNSLCNNTRLPATGNQESFSLDKFKNPGSFGYSALNKSVGSFTNHAQNSDAAYSRAKDERKDDSFLQSFLSKDF	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g01688	552	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	28	299	IPR044810	GO:0003700
	Cca07g01688	552	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	316	549	IPR044810	GO:0003700
	Cca07g01688	552	MobiDBLite	consensus disorder prediction	313	361	-	-
	Cca07g01688	552	MobiDBLite	consensus disorder prediction	102	122	-	-
	Cca07g01688	552	Gene3D	WRKY domain	199	273	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	ProSiteProfiles	WRKY domain profile.	376	441	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	Pfam	WRKY DNA -binding domain	382	438	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	Pfam	WRKY DNA -binding domain	214	270	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	SUPERFAMILY	WRKY DNA-binding domain	373	441	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	28	299	-	-
	Cca07g01688	552	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	316	549	-	-
	Cca07g01688	552	SMART	WRKY_cls	213	271	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	SMART	WRKY_cls	381	440	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	MobiDBLite	consensus disorder prediction	274	301	-	-
	Cca07g01688	552	Gene3D	WRKY domain	368	434	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	SUPERFAMILY	WRKY DNA-binding domain	207	272	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	MobiDBLite	consensus disorder prediction	265	301	-	-
	Cca07g01688	552	ProSiteProfiles	WRKY domain profile.	208	272	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca07g01688	552	MobiDBLite	consensus disorder prediction	313	337	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g01688	Cca-Chr7	42463275	42466233	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g01688	208	548	WRKY Transcription Factor Family	AT2G38470	54.596	1.46e-109	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Cca07g01688		WRKY	1.4e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g01688	K13424		-	gmx:100776837	903.279

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca07g01688	07	42463275	42466233	Cca07g01688	07	42463275	42466233	ECH