Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01679 ATGGGAGGCTGTTGCAGCCACGAAGTTTCGGTTCGAGGGAAGGTGGAAAGCGAGGTGGATGATAGAGAATATGATTATGATCGTGAAAACGATGTGTCATATGAATGTGGTGGAGCATTGGTTAGGCTGAGAGGATCCTCTAGGTTTGTATCAATGTATAGCCAACAGGGCCAAAAGGGTGTGAACCAAGATTCAATGGCAGTTTGGGAGGACTATACTGGAGAAAAAGATGTGATCTTCTGTGGTGTGTTCGATGGTCATGGTCCACTAGGCCACAAGGTTTCACAATTTATTCGTGACAATCTGCCCTCAAAACTTTCTGCAGCAATCGAAATTTCCCAGCAGAAGGCAATCAAATACTATGATGCTAATGATGCAGAAACTGCTAGTTTTGATGATGTTTACGATGATTATAGTAGCCCCAACATGTCCCTTGCTGCATGGGAGGGATGTTTTCTGAAATCCTTTGATGAGATGGATGAGTACCTTGCTCAGGAAATTAACACCGACAGCTATTGCAGTGGTTGCACTGCTGTAACTTTAATTAAACAGGGTGACCAGTTGATAGTTGGCAATTTGGGTGATTCTCGTGCGATTCTTTGCACAAGGGATAGGGACCAACTCATTCCTGTTCAACTCACTGTTGACTTGAAACCAGATATTCCAAGTGAAACCTCAAGAATCGTTAACTGTGAAGGAAGGGTTTTTGCAGCAGAAGAAGAACCAGATGTTTACAGAATATGGATGCCTGATGATGACTGCCCTGGACTAGCCATGTCAAGAGCCTTTGGGGACTTTTGCCTCAAAGATTATGGCCTCATCTCGGTTCCTGATGTATTTTACAGAAAAATCACTCCACAAGATCAATTTGTGGTTTTGGCAACTGATGGGATATGGGATGTGCTCACTAACAGTGAAGTGATAAACATAGTTGCTTCAGCACCAAGGAGGTCCATCGCAGCCAAGTTGTTGGTAAAGCGTGCTGTTAGAGCCTGGAGATACAAGTATCCTGGTTCCAAGGCTGATGATTGTGCTGTCATAATCTTGTTTCTGGATGACCATGACCAACCTGTTCTTACACATTCAAAATCCACTACGACCAGAAAACATAAACAGCGCAGCAAGCACATGCATCGCTCTAAATCCACTAGAAATGAAGACACTGAAACTGTAGATGGCAAGCTTGGTGTGGAACTAAGTGAAGAATGGAAAGCTTTTGGAGGGTTGGCTAGAGCCAACTCTTTATCAAAACTTCCACGCCTTGCTAGGGGCACGAGTAAAAGGCAATCATCTAAGTACCGTACGGGGAGTTGA 1314 0.4399 MGGCCSHEVSVRGKVESEVDDREYDYDRENDVSYECGGALVRLRGSSRFVSMYSQQGQKGVNQDSMAVWEDYTGEKDVIFCGVFDGHGPLGHKVSQFIRDNLPSKLSAAIEISQQKAIKYYDANDAETASFDDVYDDYSSPNMSLAAWEGCFLKSFDEMDEYLAQEINTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAILCTRDRDQLIPVQLTVDLKPDIPSETSRIVNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLISVPDVFYRKITPQDQFVVLATDGIWDVLTNSEVINIVASAPRRSIAAKLLVKRAVRAWRYKYPGSKADDCAVIILFLDDHDQPVLTHSKSTTTRKHKQRSKHMHRSKSTRNEDTETVDGKLGVELSEEWKAFGGLARANSLSKLPRLARGTSKRQSSKYRTGS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01679 437 ProSiteProfiles PPM-type phosphatase domain profile. 49 351 IPR001932 -
Cca07g01679 437 SUPERFAMILY PP2C-like 46 354 IPR036457 -
Cca07g01679 437 SMART PP2C_4 40 349 IPR001932 -
Cca07g01679 437 MobiDBLite consensus disorder prediction 419 437 - -
Cca07g01679 437 Pfam Protein phosphatase 2C 73 328 IPR001932 -
Cca07g01679 437 MobiDBLite consensus disorder prediction 417 437 - -
Cca07g01679 437 CDD PP2Cc 48 351 IPR001932 -
Cca07g01679 437 Gene3D - 44 354 IPR036457 -
Cca07g01679 437 PANTHER ALPHABET, ISOFORM E-RELATED 1 408 - -
Cca07g01679 437 MobiDBLite consensus disorder prediction 364 379 - -
Cca07g01679 437 MobiDBLite consensus disorder prediction 360 391 - -
Cca07g01679 437 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01679 Cca-Chr7 42299414 42303035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01679 1 357 PP2C-type Phosphatase Gene Family AT5G01700 52.661 1.26e-133 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01679 - - gmx:100783603 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01679 07 42299414 42303035 Cca07g01679 07 42299414 42303035 ECH