Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01667 ATGCGCATGAAGACTAATAATAACGTTTCTGGGGAGAGGAAATCACGGAAGAGACGCAGTGGAGTGAGTGATTCTGTGGAGGACACTCTTGAAAAGTGGAAGGAGTACAACAGGAAGCAGCAACTAGGGTGTAGAGAAAATGGGGTGGAAGTGATTCACAAAGTGCCTGCAAAAGGGTCAAGAAAAGGGTGCATGAGAGGGAAGGGAGGGCCTCAGAACTCGGATTGCAAGTTCAGAGGTGTGAGGCAGAGGATTTGGGGCAAATGGGTTGCTGAGATTAGGGAACCTATCAATGGGAAGCTTGTGGGTGAGAAGGCAAATAGGCTTTGGCTTGGTACTTTTTCCACTGCACATGAAGCTGCTCTTGCTTATGATGAGGCTGCTAAGGCCATGTATGGCCCTTGTGCCCGTTTGAATTTTCCTGAATCTAATGGATCATCATTATCATCTAGTGGTTGTGATCAGAAATCACCAACTGCTTCTGAGGTTGGTGATTTTGAGGAAGAAACAGAAGAGAAGCCTTGTGTGGCTGATGAGTCAATAGAGGAGTTGAAGGAAATGGTCACAACTGGCTTTGAACATCAAACAAGTGAAGAATGTAAGGTTATGAGTTTGAGTAGTGTTGTTAAGTCTCAAGGATTTGGGAGAGAGTTAGAGGAGGTGGTGAGAAACTTAGGTGAAGAGGGTAATCAATTGCAGAAGGAGCCTATGGATATTAGAGATGACTATTGTAGCTCTTTCGATGCTGCTGAACATGAGATTCTGGTAAAGAGTGAAGAAACAAGAGGTGAATCAGTTGAAAGTTTCAGATCGTGTGAGTTGAGCTGCAGCAATCATGATATGGTGCCAGATAGCAATCCAAGACCAAATTCTGAAGCATGTGTTGCTAAGAAAAACACCGAGGAAGTGATATCTGAAATCCTGGGACTATGTCACAGCAAGTGCTTGGAGATGACACCAAATGAGCAATATAGAAGTGAACATTTTGATGAGATGAAAACTAAGCTTAAGGGTTTGGAATGTAAGCTGAGAGCACATTGTATTCATTACAAGAATCAGGCACAAATAGATGGGGATTCCAATCATCCTTCTATGGAAAGTATGTCCCAAGTTGAGGCTTTGAACAACATCAATAATACAAACAgaaattcactacatggattcagttctgggcatagtaggaagttatgtgatctttctcaacagttacacaaacatcggaacaatatgcagtttgcagagttggaagtgggttatgattatagtttcttgcgtcctgattatgattttggcttattggaagaaaagaagttacttgatgtgtgttttccacgtataggatcttag 1347 0.3653 MRMKTNNNVSGERKSRKRRSGVSDSVEDTLEKWKEYNRKQQLGCRENGVEVIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTAHEAALAYDEAAKAMYGPCARLNFPESNGSSLSSSGCDQKSPTASEVGDFEEETEEKPCVADESIEELKEMVTTGFEHQTSEECKVMSLSSVVKSQGFGRELEEVVRNLGEEGNQLQKEPMDIRDDYCSSFDAAEHEILVKSEETRGESVESFRSCELSCSNHDMVPDSNPRPNSEACVAKKNTEEVISEILGLCHSKCLEMTPNEQYRSEHFDEMKTKLKGLECKLRAHCIHYKNQAQIDGDSNHPSMESMSQVEALNNINNTNRNSLHGFSSGHSRKLCDLSQQLHKHRNNMQFAELEVGYDYSFLRPDYDFGLLEEKKLLDVCFPRIGS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01667 448 MobiDBLite consensus disorder prediction 146 173 - -
Cca07g01667 448 SMART rav1_2 77 147 IPR001471 GO:0003700|GO:0006355
Cca07g01667 448 Coils Coil 215 235 - -
Cca07g01667 448 ProSiteProfiles AP2/ERF domain profile. 77 141 IPR001471 GO:0003700|GO:0006355
Cca07g01667 448 SUPERFAMILY DNA-binding domain 77 143 IPR016177 GO:0003677
Cca07g01667 448 Pfam AP2 domain 76 133 IPR001471 GO:0003700|GO:0006355
Cca07g01667 448 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Cca07g01667 448 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Cca07g01667 448 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 347 - -
Cca07g01667 448 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 347 - -
Cca07g01667 448 MobiDBLite consensus disorder prediction 7 29 - -
Cca07g01667 448 Gene3D AP2/ERF domain 76 142 IPR036955 GO:0003700|GO:0006355
Cca07g01667 448 CDD AP2 76 142 IPR001471 GO:0003700|GO:0006355
Cca07g01667 448 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01667 Cca-Chr7 42170059 42172140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01667 16 171 AP2-EREBP Transcription Factor Family AT2G40340 51.899 4.61e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g01667 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01667 - - ccaj:109802854 869.766