Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01665 ATGACCGTTACTCTCTTCATCTTTCTCCTCTTCTTCAAGTTCTTTCGCGGTGCGCTCTCTCTCTCCTCCGACGGCATCGCGCTTCTCACTCTAAAGTCCGCCGTCGACGCCTCCGGAGCAGCGGCGTTCGCCGGCTGGAGCGACGCCGACGCCACGCCGTGCCGGTGGTCCGGCATCACGTGCGCCAACATCTCCGGCGAGCCGCGAGTCGTGGGCGTCGCGCTCTCCGGGAAGGGCCTCCGCGGCTACCTCCCGTCGGAGCTCGGGACGCTGCTCTACCTCCGCCGCCTCAACCTCCACACCAACGCCCTCCGCGGCGCCATTCCGGCGCAGCTCTTCAACGCCACCGCGCTCCACAGCGTCTTCCTCCACGGCAACAACCTCTCCGGCGCGCTGCCTCCCTCCGTCTGCACCCTCCCCCGCCTCGAAAACCTCGACCTCTCCGACAACGCGCTCTCCGGCGGAATCCCCGACACGCTCCGGGAATGCTCCAACCTCCAGCGGTTAATCCTCGCGCGGAACAAATTCTCCGGCGAGATTCCGGCGATCCCGTGGTCCGAGCTGAAGAACCTAGTCCAGCTCGACCTATCGTCGAACCTTCTAGAAGGTTCGATCCCGGACCAGCTCGGTGAGCTTAAAACCCTAACCGGAACCCTAAACCTCTCGTTCAACCATTTATCTGGCAAGGTTCCTAAATCTCTCGGGAATTTGCCAGTTACCGTGAGTTTCGATCTTCGGAACAATGATCTCAGCGGTGAGATTCCCCAAACGGGGTCGTTTTCGAACCAGGGGCCCACCGCGTTCCTCAATAACCCAAACCTGTGCGGATTTCCTTTGCAGAGATCGTGCACAGGGTCGGCCCCGAGTGAACCGGGTTCTAGTCCTGGTTCTCATGGACCGGCGGGCCACCGGTCCGCGAAAGGGCTGAGCCCGGGTTTGATTATTTTAATCTCGGTGGCTGATGCTGCCGGGGTGGCTTTGATTGGGGTTGTTTTGGTGTATGTGTATTGGAAGAGGAAGGACAAGTCGAATGGGTGTAGTTGCACTTTGAAGAGGAGGTTTGGTGGGGAGAATGAGAAATCGAGTTTGTGTTGTTGGTGTAACGGGGTGAAGAGTGATGATTCTGAggtggaggagggggagaagggagggggagagggtgagagaggggaaggggATTTGGTGGCCATTGATAAGGGTTTTAACTTTGAGCTTGATGAGTTGTTGAGGGCTTCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGCTGGGGAATGGGGTGCCTGTGGCTGTGAGGAGATTGGGGGAGGGTGGGGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTCAAGCCATTGGCAAAGTCAAGCACCCTAACATTGTGAGGTTGAGAGCCTATTATTGGGCTCCTGATGAGAAGCTTCTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGGGAGAAATGGTCAACCATCTCCGAATCTTTCATGGTCAACCAGGCTGAGGATAATCAAAGGAACAGGCAGGGGTTTGGCATATCTCCATGAATGCAGTCCAAGAAAATTTGTTCACGGTGACATCAAACCCTCGAACATCCTTCTTGACACGGATTTCCAACCCCACATTTCTGATTTTGGTCTAAACCGGCTAATCAGCATCACAGGCAACAACCCATCCTCTGGTGGCTTTATGGGAGGAGCTCTTCCTTACTTGAAGCCATCACAAACAGAGCGAACCAACAACTACAAGGCCCCTGAGGCTCGAGTCCCAGGTTGCAGACCGACCCAGAAATGGGATGTGTATTCATTTGGAGTTGTATTACTTGAATTGCTTACTGGGAAATCCCCGGATTCTTCTCCGGCCGCATCAACATCCATGGAAGTCCCTGACTTGGTGAGGTGGGTCAAGAAAGGGTTTGAACAAGAAAGTCCATTATCTGAAATGGTTGACCCATCGATGCTCCATGAAGTGCATGCCAAGAAAGAGGTGTTGGCTGTGTTTCACGTAGCACTACAATGCACTGAAGGAGACCCTGAGGTCAGACCTAGAATGAAAACCGTCTCTGAAAATCTTGAAAGAATTGGATCATAA 2124 0.5278 MTVTLFIFLLFFKFFRGALSLSSDGIALLTLKSAVDASGAAAFAGWSDADATPCRWSGITCANISGEPRVVGVALSGKGLRGYLPSELGTLLYLRRLNLHTNALRGAIPAQLFNATALHSVFLHGNNLSGALPPSVCTLPRLENLDLSDNALSGGIPDTLRECSNLQRLILARNKFSGEIPAIPWSELKNLVQLDLSSNLLEGSIPDQLGELKTLTGTLNLSFNHLSGKVPKSLGNLPVTVSFDLRNNDLSGEIPQTGSFSNQGPTAFLNNPNLCGFPLQRSCTGSAPSEPGSSPGSHGPAGHRSAKGLSPGLIILISVADAAGVALIGVVLVYVYWKRKDKSNGCSCTLKRRFGGENEKSSLCCWCNGVKSDDSEVEEGEKGGGEGERGEGDLVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVRLRAYYWAPDEKLLISDFISNGNLATALRGRNGQPSPNLSWSTRLRIIKGTGRGLAYLHECSPRKFVHGDIKPSNILLDTDFQPHISDFGLNRLISITGNNPSSGGFMGGALPYLKPSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPAASTSMEVPDLVRWVKKGFEQESPLSEMVDPSMLHEVHAKKEVLAVFHVALQCTEGDPEVRPRMKTVSENLERIGS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01665 707 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Cca07g01665 707 MobiDBLite consensus disorder prediction 285 304 - -
Cca07g01665 707 Gene3D Transferase(Phosphotransferase) domain 1 486 707 - -
Cca07g01665 707 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 706 - -
Cca07g01665 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Cca07g01665 707 SMART LRR_typ_2 91 115 IPR003591 -
Cca07g01665 707 SMART LRR_typ_2 188 212 IPR003591 -
Cca07g01665 707 SMART LRR_typ_2 139 163 IPR003591 -
Cca07g01665 707 CDD STKc_IRAK 416 705 - -
Cca07g01665 707 SUPERFAMILY L domain-like 23 280 - -
Cca07g01665 707 Gene3D Ribonuclease Inhibitor 184 285 IPR032675 -
Cca07g01665 707 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 5 706 - -
Cca07g01665 707 Gene3D Phosphorylase Kinase; domain 1 398 485 - -
Cca07g01665 707 SMART serkin_6 414 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01665 707 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Cca07g01665 707 ProSiteProfiles Protein kinase domain profile. 410 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01665 707 Pfam Protein kinase domain 415 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01665 707 Gene3D Ribonuclease Inhibitor 22 183 IPR032675 -
Cca07g01665 707 SUPERFAMILY Protein kinase-like (PK-like) 415 702 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01665 Cca-Chr7 42146447 42150667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01665 18 705 Receptor kinase-like Gene Family AT1G67510 69.220 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca07g01665 Pkinase 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01665 - - gmx:100795021 1225.31