Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01664 ATGCTCATGGCTTCCTACAATGCAGAGCGTTGGGTTTCATGTCCCCAAGCATGTGAGAACCAAGTATCTTTGCATGTGGATGGTAGCCGTCAAGGTTGTCCCGATTTGATAGATATTCTTAAGGTTGAATTGCTATTAATCAATCATGGTTGGACTTTAGCTTGGGAGCTTCATTTTGATGATGTGCTTCGTAACACTGATTCACTCCATGCATTGAATCTCATTAACGCGGCAGCTCCGTCGTTGGCCCGCCGCCTCCACCTTGCGCCGCCGCGCTTCGGTGACGACGGAAACACTCAGAATTGTTCCTCCGCGGAATATTCCCCGTTTCCCCGTTTTGGAATAATCCCCTTCGCTTCTCGTTGCTTTCGCTTTGTTCAAGGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTTGTTTCCAATAAGATGCAGAAATCAGTTGTCGTGGCAGTGGACAGACTATTTTACCATAAAGTGTATGACCGTTATGTCAAGCGCACCTCTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACCGAGTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGAATAAACATTGGGTTGTTGCTGAAATTCTTAAGAAGGCACGGATATATGTTCCACCCTCCACCCCGGTATCTGATAATATGAAATCTAGATCTGAAGCAGCACCTACTTCATAA 705 0.4582 MLMASYNAERWVSCPQACENQVSLHVDGSRQGCPDLIDILKVELLLINHGWTLAWELHFDDVLRNTDSLHALNLINAAAPSLARRLHLAPPRFGDDGNTQNCSSAEYSPFPRFGIIPFASRCFRFVQGWEEKMKQVVGMVVSNKMQKSVVVAVDRLFYHKVYDRYVKRTSKFMAHDENNLCNIGDRVRLDPSRPLSKNKHWVVAEILKKARIYVPPSTPVSDNMKSRSEAAPTS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01664 234 Pfam Ribosomal protein S17 138 205 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca07g01664 234 Gene3D - 126 211 IPR012340 -
Cca07g01664 234 Hamap 30S ribosomal protein S17 [rpsQ]. 133 208 IPR019984 GO:0003735|GO:0005840|GO:0006412
Cca07g01664 234 TIGRFAM uS17_bact: ribosomal protein uS17 134 203 IPR019984 GO:0003735|GO:0005840|GO:0006412
Cca07g01664 234 PANTHER 37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL 133 226 - -
Cca07g01664 234 SUPERFAMILY Nucleic acid-binding proteins 133 220 IPR012340 -
Cca07g01664 234 PRINTS Ribosomal protein S17 family signature 184 194 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca07g01664 234 PRINTS Ribosomal protein S17 family signature 194 201 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca07g01664 234 PRINTS Ribosomal protein S17 family signature 152 175 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca07g01664 234 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 133 226 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01664 Cca-Chr7 42135317 42140218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01664 138 207 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 38.028 6.75e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01664 K02961 - gmx:100794499 183.726