Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01647 ATGGAAAACATGATGCGGCCAGAGGATCTACAATCTCCATGGTTATTTTATGGAGACATGAACTCAACTTTTGATCAAGGTGTTGAGTCATATGGCTTCACCATGAATAATCATGTTGTTGATTTTGAACCCCATGACTTTACTATGACGGATGATCATGTTGATGATTGTGGACTCAATACCTTATTGAGTTCTCTAGAGGACACTACATCTGAAATATGCTCCATCACCTTTCCTTCCTCACCCATATTCCCCAATGATCATGTCCAATTCCCAATCAATGAAGAAACCATTTACCTTCCATCACTGATGGAGTTAGATGATTTTGATTCCATCTTGAGTGCTCAAATTGTTAGTTCTCAAAGTGAAAGTGTAGGGAGCTTCTTCCCTTCACAAAATTTGTCCTCCAGTGAGGTGGAAAATGATGCATGGAGTCCTAACCCATCTGTGATGTCAGAATCATCCTCAATTCATACATCACCACTGACTTTACCACTAGAACACATGGAAATTGACAACCAAGTGAGTCTTCCACACTTGATGGAGGCTTGTGGAGAGGCCTTGGAACAAGATCAAAAAGCACTAGCAGAAGTTCTTTTGAAGTGCATGAGCCAAAAAGCTAGTCCACTTGGTGAGTCTCTAGAGCGCCTTGTATTTTATTTGTCTCAAGGCATGGCAAATCATGGACACTATCTCAAAGGGGAGGCCTTCAAGAACTTTGAGCATGCTTTGAGGGCACTCTATCAAGGAACCCCAATTGGGAAAGTTGCTCACTTTGCAGCTATTTCAGCAATTGTTGAAGCCTTGCCACAAGATTGTGATGTTGTGCACATAGTGGACTTTTGTGGTGGACATGGGGAGGAATGGCCTATTATGATTGAGGCTATTGCACACATGCACAAACCATTGAAATTGACATCAATCAAATGGGGTGATCATGATGGCACTAAATGTTGTTCCATTCCATGCAATTTTGAGGATACCAAAAGGAACCTCTATGAGCATGCCAAATCCTGTGGTTTGAAGTTGGTGGTGGAGGAGAAAGGAGTGGAGGAACTTGTTGCTGAAATTAACAAAACAGGTGGGAGAGGAGAGTTTTTGGTCTTCAATTGCATGATTGACCTTCCACATATGGGAAGAGTAAGGAGCAGAAAACATGCCTTAGAGTTTTTAAGGGTGGCTGAGGATTTGATCAATAGCTCTGGAATCAGGGGAATGATCACTTTTGGGGATGGTGGTGCTTTTGAGAAAGTGAAAAATTGCTTGAATTTCAAGTCATTTTTTGATGGACATGTTGTGCATTACCAAGGCTTGTTAGAATCTATTGAATCACATTTTCCATCTCGTTTCTCAGAAGCAAGACTTGCAATGGAGCAATTGTTTTTGCAACCTTGTATTTCTTCTCTTGATTGGTTACAAATGTGGGAGGAAATGAAAAGGGGTTGCCATGTTGAGGCAAAGATTAGTTTAGAGGGTTGTAGATTAAGTAAGAATGTTTTGATGGAAATCAGAGAAGTGTTGAAAGGAAGTGAAGGTTCCTATCAGACCAGGATTGAAGAAGAACATGACAATGAACTAATTTTGGAGTACAATGGAACTCAACTATTAAGATTTTCAGCTTGGAAGAAAAACTAA 1635 0.4049 MENMMRPEDLQSPWLFYGDMNSTFDQGVESYGFTMNNHVVDFEPHDFTMTDDHVDDCGLNTLLSSLEDTTSEICSITFPSSPIFPNDHVQFPINEETIYLPSLMELDDFDSILSAQIVSSQSESVGSFFPSQNLSSSEVENDAWSPNPSVMSESSSIHTSPLTLPLEHMEIDNQVSLPHLMEACGEALEQDQKALAEVLLKCMSQKASPLGESLERLVFYLSQGMANHGHYLKGEAFKNFEHALRALYQGTPIGKVAHFAAISAIVEALPQDCDVVHIVDFCGGHGEEWPIMIEAIAHMHKPLKLTSIKWGDHDGTKCCSIPCNFEDTKRNLYEHAKSCGLKLVVEEKGVEELVAEINKTGGRGEFLVFNCMIDLPHMGRVRSRKHALEFLRVAEDLINSSGIRGMITFGDGGAFEKVKNCLNFKSFFDGHVVHYQGLLESIESHFPSRFSEARLAMEQLFLQPCISSLDWLQMWEEMKRGCHVEAKISLEGCRLSKNVLMEIREVLKGSEGSYQTRIEEEHDNELILEYNGTQLLRFSAWKKN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01647 544 MobiDBLite consensus disorder prediction 138 157 - -
Cca07g01647 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 30 542 IPR005202 -
Cca07g01647 544 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 30 542 - -
Cca07g01647 544 ProSiteProfiles GRAS family profile. 168 542 IPR005202 -
Cca07g01647 544 Pfam GRAS domain family 179 542 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01647 Cca-Chr7 41878109 41879743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01647 175 326 GRAS Transcription Factor Family AT1G66350 29.940 1.29e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca07g01647 GRAS 3.6e-30 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01647 - - gmx:100784347 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01647 07 41878109 41879743 Cca07g01647 07 41878109 41879743 ECH