Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01646 ATGGAAAAGATGATGCAGCCAGAGGATCAACAATCTCCATGGTTATTCTATGAAGAGATGAACTCAACTTTTGATCAAGGTGTTGAGTTATATGGCTTCACCATGAATAACCATGTTGATTTTGAACCTTATGGCTTCACTATGATGGATGATCATGTTGATGATTGTGGACTCAATACCCTATTGAGTTCTCTAGAGGACACTACTTCTGAAATATGCTCCATCACCTTTCCTTCCTCCCACATATTCCCCAATGATCATGTCCAATTCCCAATCAATGAAGAAACCCTTTACCTTCCAACACTGATGGAGTTGGATGATTTTGATTCCATATTGAGTGCTCAAATTGTTAGTTCTCAAGGTGAAAGTGAAGGGAGTTTCTTCCCTTCACAGAATTTATCCTCCAGTGAGGTGGAAAATGATGCATGGAGTCCTGCCTTATCTGTGAATTCAGAATCATCCTCAATTCATACACCACCTCTGACTTTACCACAAGAACACATGGAAATTGACAACCAAGTGAGTCTTCCACACTTGATGGAGGCTTGCGGAGAGGCCTTGGAGCAAGACCAGAAAGCACTGGCAGAAGTGATTTTGAAGTGCATGAGCCAGAAAGCTAGTCCACTTGGTGAGTCTCTAGAGCGCCTTGCATTTTATTTGTCTCAAGGCATAGCAAATCATGGAGACTATCTCAAAGGGGAGGCCTTCAAGAACTTTAAGCCTGCTTTGACGGCACTCTATCAAGGAAACCCAATCGGGAAAGTTGCTCACTTTGCAGCTATTTCAGCAATTGTTGAAGCCTGGCCACAAGATTGTGATGTTGTGCACATAGTGGACTTTTGTATTGGACATGGGGAGGAATGGCCTATTATGATTGAAGCTATTGCACACATGCACAAAACATTGAAATTGACATCAATCAAATTGGTTGATCATGATGGCATTGAATATTGTTCCACTCCATGCAATTTTGAGGAAACTAGAAGGCAACTATATGAACATGCCAAAACTTATGGTGTGAAGTTAGTGGTAGAGGAGAAAGGAGTGGAGGAACTTGTTGCTGAGATTAACAAAAGGGGTCGGAGAGGAGAGTTTTTGGTCTTCAATTGCATGATTGACCTTCCACACATGGGAAGACTAAGAAGTAGAAGACATGCCTTAGAGTTTCTAAGGGTAGCTGAGGATTTGATCAATAGCTCTGGCAACAGGGGAATGATCACTTTTGGGGATGGTGGTGCTTTTGAGAAAGTGAAAAATTGCTTGAATTTCAAGTCATTTTTTGATGGACATTTGGTGCATTACCAAGCCTTGTTGGAGTCTGTTGAATCACATTTTCCATCTCATTTCTTAGAAGCAAGACTTACAATGGAGCAATTATTTTTGCAACCTTGTATTTCTTCTCTTGATTGGTTGCAAACATGGGAGGAAATGAAAAGGGATTGCCATGTTGAGGCAAAGATTAGCTTAGAGGGTTGTAGATTGGGCAAAAATGTTTTGATGGAAATCAGAGAAGTGTTGAGAGGAAGTGAAGGTTCCTATCAGACCAGGATTGAAGAAGAATATGACAATGAACTGGTTTTGGAGTATAAAGGAACTCAACTATTAAGATTTTCAACTTGGAAAAAAAACTAA 1632 0.405 MEKMMQPEDQQSPWLFYEEMNSTFDQGVELYGFTMNNHVDFEPYGFTMMDDHVDDCGLNTLLSSLEDTTSEICSITFPSSHIFPNDHVQFPINEETLYLPTLMELDDFDSILSAQIVSSQGESEGSFFPSQNLSSSEVENDAWSPALSVNSESSSIHTPPLTLPQEHMEIDNQVSLPHLMEACGEALEQDQKALAEVILKCMSQKASPLGESLERLAFYLSQGIANHGDYLKGEAFKNFKPALTALYQGNPIGKVAHFAAISAIVEAWPQDCDVVHIVDFCIGHGEEWPIMIEAIAHMHKTLKLTSIKLVDHDGIEYCSTPCNFEETRRQLYEHAKTYGVKLVVEEKGVEELVAEINKRGRRGEFLVFNCMIDLPHMGRLRSRRHALEFLRVAEDLINSSGNRGMITFGDGGAFEKVKNCLNFKSFFDGHLVHYQALLESVESHFPSHFLEARLTMEQLFLQPCISSLDWLQTWEEMKRDCHVEAKISLEGCRLGKNVLMEIREVLRGSEGSYQTRIEEEYDNELVLEYKGTQLLRFSTWKKN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01646 543 Pfam GRAS domain family 178 541 IPR005202 -
Cca07g01646 543 ProSiteProfiles GRAS family profile. 167 541 IPR005202 -
Cca07g01646 543 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 29 541 - -
Cca07g01646 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 541 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01646 Cca-Chr7 41846095 41847901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01646 174 340 GRAS Transcription Factor Family AT1G66350 30.409 2.81e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca07g01646 GRAS 1.2e-31 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01646 - - gmx:100784347 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01646 07 41846095 41847901 Cca07g01646 07 41846095 41847901 ECH